Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30766
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0239 - 21191793-21191840,21192227-21193276                       28   5.4  
09_06_0289 - 22053561-22055666,22055745-22055771                       27   9.5  

>02_04_0239 - 21191793-21191840,21192227-21193276
          Length = 365

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -3

Query: 607 PQHEGVFSGL---PGPLGQGEHADSFSVARVRPRTSKGITDXXXXXXXXLEDAGPSKKNF 437
           P  EG +SGL   PG  G+GE  DS    R+ P   +  ++        +E+A     + 
Sbjct: 63  PGEEGSWSGLLSDPGDKGKGEGFDSVPEGRLDPLVEEDWSEERLRFGGGVEEA-----SG 117

Query: 436 NTSSVSCATPSCRIRHED 383
             S ++ A+P   +R E+
Sbjct: 118 EPSVLAAASPCGEVRREE 135


>09_06_0289 - 22053561-22055666,22055745-22055771
          Length = 710

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 243 SFLWYSRKRKGDKAATDELAMADEP 169
           SF+W     KG K  +D+L M D+P
Sbjct: 660 SFVWLLLSIKGTKTLSDKLQMPDQP 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,810
Number of Sequences: 37544
Number of extensions: 287398
Number of successful extensions: 670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)