Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30766
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16563.1 68417.m02506 aspartyl protease family protein contai...    28   6.0  
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica...    28   6.0  

>At4g16563.1 68417.m02506 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 499

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 454 PSKKNFNTSSVSCATPSCRIRHEDL 380
           PS  + + ++VSC++PSC   H  L
Sbjct: 129 PSSLSSSATTVSCSSPSCSAAHSSL 153


>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P41410 DNA
           repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1132

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 134 KRTASR-DSFLNSLLNSAQMTNSCNEDQVFG 45
           +RT SR +S+LNS+LN ++  +   EDQ  G
Sbjct: 9   RRTRSRTESYLNSILNKSKGISGEEEDQSLG 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,511
Number of Sequences: 28952
Number of extensions: 213653
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)