Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30764
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)          70   2e-12
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)           30   2.2  
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)                    30   2.2  
SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)                    29   2.9  
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)                     29   5.0  
SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)    29   5.0  
SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
          Length = 260

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
 Frame = -3

Query: 702 GKSNSEPLGDVEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSP 523
           G    + L  +  NL    +  +   I  ++E IN   +P + ++   +   ++K +  P
Sbjct: 111 GVEPEQALACLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHP 170

Query: 522 NLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAK 343
           NL    D++H+ +   D+   I  L   IGHVQ A  P R  P T GE+ +  +L  L  
Sbjct: 171 NLAAQYDLYHMARQGLDVQAGIVLLAGRIGHVQFADYPGRGAPGT-GELQFAPLLTALRD 229

Query: 342 SGYDEWVGLEYK-AIGNTKDGLTWI 271
           SGY  W+  EY+     T+  L W+
Sbjct: 230 SGYQGWLAAEYRPGEAGTQASLGWL 254


>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
          Length = 274

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 427 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 573
           H S++W    N   N  S LL   N  H S++WT    N  H+SS+ TQ
Sbjct: 17  HNSSLWT-QGNTTHN--SSLLTQGNTTHNSRLWTQG--NTTHNSSLWTQ 60



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 427 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 573
           H S++W    N   N  S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 174 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 217


>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
          Length = 262

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 495 HLQQIAGDITHNITKLLPYIG---HVQIAQVPNRNEPDT 388
           H QQ+A +IT+N  K  P IG   H Q AQ    N P T
Sbjct: 210 HHQQLAQNITNNRPKTSPTIGPKHHQQSAQNNTNNRPKT 248


>SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 373 VYLSGRVRLVTIRNLSYLHMSNVWQ-*FRNIMSNVASDLLKMKNVQH-QSQIWTVNTFN 543
           VY+ G VRL T     +L  + +W+  ++ I+  V  + + +KN  H + ++ TVN +N
Sbjct: 17  VYIDGGVRLGTDARSVFLGRTVIWELAYKRIVFEVPGN-ITVKNAMHCEQKVVTVNDYN 74


>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 427 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 573
           H S++W    N   N  S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 141 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 184


>SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)
          Length = 422

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 6   TNAIRHKYQSSTFTPQYYCIIF*ESKIEQGNSVRIKLK 119
           +N I H+ + S    QY C+   E +++Q N+ + KL+
Sbjct: 307 SNNIEHERERSKAIKQYMCLYIAEVRVKQQNAAKTKLE 344


>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 256 VTIIVD--PSQTILRVSDGFIFESNPFIVSALSQVF 357
           +T+ +D  P QTILRV D F++E N  +      VF
Sbjct: 518 LTVFIDSFPIQTILRVWDTFLYEGNKVLFRYALAVF 553


>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 226

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 558 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 463
           R + ++K+ID+   PN+  +LDIFH+  +    TH
Sbjct: 52  REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86


>SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 432 HVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGLEYKAIGNTKD 286
           H+ I    ++         +YK  L    KS  D+W G  +  IGNT D
Sbjct: 569 HILIGNTHDQQGKYEEARGHYKEALRLYQKSSDDQWQGKAHILIGNTHD 617


>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
          Length = 638

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 573 LSDYGRAVDII--KRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRN 400
           ++  G AV +I  + I  P  +L L  FH+  +AG ++   + +  + G +++  +    
Sbjct: 508 MTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGLSEESSIITKFKGRLEVEDLKTVK 567

Query: 399 EPDTPGE 379
             D  G+
Sbjct: 568 GEDADGK 574


>SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 481 DLLKMKNVQHQSQI-WTVNTFNNVHSSSIITQEIFGHRILVDWFD 612
           D++  +N Q    +    NTFN+  S +  +  IFGH    DW +
Sbjct: 153 DMMMSRNPQQMQNLDHAANTFNDCQSHTYQSNTIFGH---ADWME 194


>SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 402 NEPDTPG----EINYKYVLEHLAKSGYDEWVGLEYKAIGNTKDGLTWINNYGYSL 250
           N+ D PG     I +K  LEHL K+       LE +A+GN +   T I+ + + L
Sbjct: 30  NDVDLPGVWFFRIPHKVTLEHLVKNAARRCWCLEAEALGNRRSS-TIIDLFSFPL 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,511,428
Number of Sequences: 59808
Number of extensions: 431774
Number of successful extensions: 1136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)