Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30764
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-2|AAB53826.1| 262|Caenorhabditis elegans Hypothetical pr... 108 5e-24
Z81579-8|CAN86617.1| 930|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81579-7|CAB61019.1| 927|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein. 31 1.1
U50312-5|AAA92322.1| 369|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132951-6|CAC44308.2| 692|Caenorhabditis elegans Hypothetical ... 29 2.5
Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical pr... 29 4.4
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 29 4.4
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane... 29 4.4
>U00048-2|AAB53826.1| 262|Caenorhabditis elegans Hypothetical
protein C05D11.5 protein.
Length = 262
Score = 108 bits (259), Expect = 5e-24
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
Frame = -3
Query: 666 KNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQ 487
+N+ +A + K + LIEPIN+Y++P Y L++Y A+D+I+ S NL++ D FH Q
Sbjct: 127 ENVRFAAEKFKEHKLICLIEPINKYTIPGYHLNNYEDAMDVIQMDQSNNLKIQYDTFHAQ 186
Query: 486 QIAGDITHNITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWV-GLEY 310
QI G I + KL YIG++Q+AQVPNR DT GEI+Y ++ + + +S WV G EY
Sbjct: 187 QINGQIGAIMRKLKDYIGYIQVAQVPNRGACDTRGEIDYHFIFDEI-RSINPSWVIGAEY 245
Query: 309 KAIGNTKDGLTWINNYGYS 253
+ K WI N S
Sbjct: 246 L---DAKPSFNWIENMSLS 261
>Z81579-8|CAN86617.1| 930|Caenorhabditis elegans Hypothetical
protein R13H4.4b protein.
Length = 930
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3
Query: 675 DVEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 496
+ +N Y D + + +E + PK S+YGR D+I ID+ R+ +D
Sbjct: 231 EARRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRIEIDPA 288
Query: 495 HLQQ 484
H ++
Sbjct: 289 HYRR 292
>Z81579-7|CAB61019.1| 927|Caenorhabditis elegans Hypothetical
protein R13H4.4a protein.
Length = 927
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3
Query: 675 DVEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 496
+ +N Y D + + +E + PK S+YGR D+I ID+ R+ +D
Sbjct: 231 EARRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRIEIDPA 288
Query: 495 HLQQ 484
H ++
Sbjct: 289 HYRR 292
>AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein.
Length = 927
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3
Query: 675 DVEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 496
+ +N Y D + + +E + PK S+YGR D+I ID+ R+ +D
Sbjct: 231 EARRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRIEIDPA 288
Query: 495 HLQQ 484
H ++
Sbjct: 289 HYRR 292
>U50312-5|AAA92322.1| 369|Caenorhabditis elegans Hypothetical
protein B0222.5 protein.
Length = 369
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 702 GKSNSEPLG-DVEKNLLYAVDVLKGENIQGLIEPIN 598
GK + EP+ D +KN Y VD G IQG +P++
Sbjct: 112 GKGDFEPVQCDSKKNQCYCVDTNTGREIQGTRKPLS 147
>AL132951-6|CAC44308.2| 692|Caenorhabditis elegans Hypothetical
protein Y67H2A.7 protein.
Length = 692
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 591 SMPKYFLSDYGRAVDIIKRIDSPNLRLMLD 502
++ +YF SD G DII+R D P +L ++
Sbjct: 501 NLMEYFFSDLGVMTDIIRRTDRPEEQLSIE 530
>Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical
protein C08B11.4 protein.
Length = 822
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 200 TILLYYSICYLRAEKSMP*WVTH*GNDFQFYSYRIPLFNFRFLKY 66
T L+Y + L+ ++ W + ND QF+ + +PL FLK+
Sbjct: 517 TNLIYLNNFLLQDQECCMGWTWYLANDMQFHIFLMPLLVIVFLKW 561
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Frame = +1
Query: 244 KSKTVTIIVDPSQ--------TILRVSDGFIFES----NPFIVSALSQVF*NIFVVYLSG 387
+S VT++ D +Q + LR +D F+ ES +PF+ AL +I V L+
Sbjct: 209 RSNLVTVVDDGAQNPVVKKVISYLRDADIFVSESIPIDHPFLAQALEDSDSSIVVSVLNK 268
Query: 388 RVRLVTIRNLSYLHMSNVW 444
+ L T+++ S MS +W
Sbjct: 269 QQLLKTVKHPSIYAMSKMW 287
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
protein F35H10.10 protein.
Length = 1404
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Frame = +1
Query: 244 KSKTVTIIVDPSQ--------TILRVSDGFIFES----NPFIVSALSQVF*NIFVVYLSG 387
+S VT++ D +Q + LR +D F+ ES +PF+ AL +I V L+
Sbjct: 209 RSNLVTVVDDGAQNPVVKKVISYLRDADIFVSESIPIDHPFLAQALEDSDSSIVVSVLNK 268
Query: 388 RVRLVTIRNLSYLHMSNVW 444
+ L T+++ S MS +W
Sbjct: 269 QQLLKTVKHPSIYAMSKMW 287
>AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane
protein NRF-6 protein.
Length = 822
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 200 TILLYYSICYLRAEKSMP*WVTH*GNDFQFYSYRIPLFNFRFLKY 66
T L+Y + L+ ++ W + ND QF+ + +PL FLK+
Sbjct: 517 TNLIYLNNFLLQDQECCMGWTWYLANDMQFHIFLMPLLVIVFLKW 561
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,914
Number of Sequences: 27780
Number of extensions: 344088
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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