Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30764
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR ...    30   1.8  
At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam profi...    29   3.1  
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina...    29   4.1  

>At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 388 RVRLVTIRNLSYLHMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSII 567
           RV++   + L  L    VW     I+ N   DLL  +N++ Q   +  N   N+ SS   
Sbjct: 56  RVQMEEGKGLERLQQVQVWLKRVEIIRNQFYDLLSARNIEIQRLCFYSNCSTNLSSSYTY 115

Query: 568 TQEIF 582
            Q +F
Sbjct: 116 GQRVF 120


>At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam
           profiles: PF04841 Vps16, N-terminal region, PF04840:
           Vps16, C-terminal region; identical to cDNA VCL1 (VCL1)
           GI:13877132
          Length = 858

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -2

Query: 454 EIIAIHWTCANSSGSES*RAGHARR---DKLQIC 362
           E++ +HW CA  + S S    H      DKLQ+C
Sbjct: 492 EVVIMHWACAKITASPSTPDSHLLEILLDKLQLC 525


>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
            family protein similar to SP|Q9Z1T6 FYVE
            finger-containing phosphoinositide kinase (EC 2.7.1.68)
            (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
            (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
            profiles PF01504: Phosphatidylinositol-4-phosphate
            5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
            chaperonin family
          Length = 1791

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 681  LGDV-EKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLS 568
            LGDV + +LL  VD  K E + G+I+ + QY+  K+  S
Sbjct: 1684 LGDVMDYSLLVGVDEEKNELVLGIIDFLRQYTWDKHLES 1722


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,679
Number of Sequences: 28952
Number of extensions: 310624
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)