Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30763
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    30   0.38 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   1.2  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    28   1.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.7  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   4.7  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   4.7  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    26   6.2  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   6.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   6.2  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.2  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   8.2  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.2  

>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 180 EVTTASGMFEALCNHIKYATNKGNIR 257
           EV T++      CNH+ Y+++KGNI+
Sbjct: 226 EVITSAEFHPINCNHLMYSSSKGNIK 251


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 340  DTRSQMEAL*EIQHELNLQ-RFV*NLDGKRRAPHGTFCRSYSLLTEKILNSLNY 498
            D   + EA     H +NL+  F+ N+  + R P  +F    SLL++  LN   Y
Sbjct: 1736 DINDEKEAREAAMHAVNLKTNFLANMSHELRTPFSSFYGMLSLLSDTKLNEEQY 1789


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 189 TASGMFEALCNHIKYATNKGNIRSAITIFPQRTDGKHDYRIWNPQLINY 335
           T+S   +A   H  +  N+G+I +A+ +F      K D +      +NY
Sbjct: 485 TSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKNYLNY 533


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
 Frame = -1

Query: 667 ISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSLNQSYSGCSNCTSITISL--GS 494
           +S+   QPL +  V+S+P Q++ M   +         + N+  +   N  +    L  GS
Sbjct: 84  VSLQSQQPLSKPVVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGS 143

Query: 493 SKNSGSFPSAESTSGKMSHGVRGAFHPSFIQISVNSTRAGSPIMLPSGSWYP 338
              S S   A ST+    H      +P+   + V S  A      PS    P
Sbjct: 144 VPPSASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAP 195


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 268 RSSHN---APTVNMTTEYGIRSLSIMQDTRSQ 354
           + SHN    P+ +  T+  I SLS++ DT+SQ
Sbjct: 103 QQSHNLPSTPSADAETQRNIGSLSVLDDTKSQ 134


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -2

Query: 192 LWSLLCNRISVTFSTVFFRCTWSHYAKPTWPRTPIPKF-*VDTFLFLSI--PSSLRLTSL 22
           LW  L   IS+T S       W    +   P  P PKF  V   +F S    + L +T+ 
Sbjct: 170 LWIGLVYNISITLSLYSLTTFWVCLHEELAPFRPFPKFLSVKAIIFASYWQQTVLSITNW 229

Query: 21  CGLLS 7
            GLL+
Sbjct: 230 LGLLN 234


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 261 LNEYFLYS*RI*CDCTMLRTYRLLWSLLCNRISVTFSTVFFRCTWSHYAKPTWPRTP 91
           ++ + LY+ +    C  L    L ++LLC  I +   TV +        K  WPR P
Sbjct: 16  ISNFILYNRKYRKSCA-LAFLTLRYTLLCYSIPIHIHTVNYLAFTIARMKRVWPRIP 71


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -1

Query: 556 SLNQSYSGCSNCTSITISLGSSKNSGSF--PSAESTSGKMSHGVRGAFHPSFIQISVNST 383
           +++++ S  +  TS T   GSS +SGS    S++S+SG  S+ +      +F+ + +  T
Sbjct: 480 AVSRNSSASTMSTSYTSGSGSSNSSGSSSNSSSKSSSGASSYNLNMVI--TFLSVVIGGT 537


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 514 ITISLGSSKNSGSFPSAESTSGKMS 440
           +T  +GSS  SGSFP  +S   K S
Sbjct: 487 VTDKIGSSATSGSFPVIKSLMDKRS 511


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 193 QAVCSKHCAITSNTLRIKEIFVQQ 264
           ++VC K+  ITS  + ++EIF+ Q
Sbjct: 210 KSVCLKNAEITSICMAVREIFLSQ 233


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 93  PIPKF*VDTFLFLSIPSSLRLTS 25
           PIP F  +TF  L+ P  L+LTS
Sbjct: 79  PIPTF-KETFAILTFPQKLKLTS 100


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 80  NFGIGVRGQVGLA*CDQVHRKNTVEKVTDIRLQRSDHSKR 199
           N+G G+   + L  CD+ HR  ++   T I L +    KR
Sbjct: 329 NYGCGI--DIDLLICDEAHRLKSMSSQTWITLNKLKTRKR 366


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 159 TFSTVFFRCTWSHYAKPTWPRTPIPKF*VDT 67
           T S+  F    S Y+KP+ P  P PKF  D+
Sbjct: 340 TESSSQFSSRSSEYSKPSRPTAPKPKFKQDS 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,584
Number of Sequences: 5004
Number of extensions: 75319
Number of successful extensions: 228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)