Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30763
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 33 0.30
09_04_0376 + 17077737-17078447 33 0.30
06_01_0230 + 1765913-1766251,1766365-1766445,1766553-1766651,176... 31 1.2
04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271 31 1.2
11_06_0161 + 20811333-20811826,20812731-20812773,20813012-20813137 30 1.6
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 30 1.6
04_01_0303 + 4132988-4133184,4133701-4134202,4134261-4134638,413... 30 2.1
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 29 3.7
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 29 3.7
03_04_0174 - 18044516-18046327 29 4.9
02_05_0227 - 26994462-26994591,26994714-26994803,26994895-269950... 29 4.9
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 4.9
11_06_0729 - 26721730-26722797 28 6.5
04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974 28 6.5
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 28 6.5
01_01_1187 + 9444742-9445317 28 6.5
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383 28 8.6
06_03_0988 + 26642247-26642506,26642790-26642872,26643150-266432... 28 8.6
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 28 8.6
05_05_0082 + 22252993-22255617 28 8.6
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680... 28 8.6
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 32.7 bits (71), Expect = 0.30
Identities = 28/93 (30%), Positives = 45/93 (48%)
Frame = -1
Query: 625 NSRPPQSSLMLETAGKAYHFQPMSLNQSYSGCSNCTSITISLGSSKNSGSFPSAESTSGK 446
N + SL + T G + +P + + T+ T S GS + + A+S G+
Sbjct: 201 NKETGRISLTMRTGGD--YVKPKTETPKAASGGRNTTATTSRGSPRQTRERDEAKSM-GE 257
Query: 445 MSHGVRGAFHPSFIQISVNSTRAGSPIMLPSGS 347
++ V+G F ++ NSTRAGS + LP GS
Sbjct: 258 TNY-VQGQFLDGVVK---NSTRAGSFVTLPDGS 286
>09_04_0376 + 17077737-17078447
Length = 236
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = -1
Query: 670 PISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSLNQSYSGCSNCTSITISLGSS 491
P+S PM P + S PPQ S+ TAG Y Q S+ +Y + + ++ S
Sbjct: 43 PVS-PMGTPSPQF---SPPPQMSVTTTTAGGGYQDQYNSMPATYGAGAGVHQLDFAMSSP 98
Query: 490 KNSGSFPSAESTSGKMSHGVRGAFHPSFIQ 401
+ P S+S FH + +Q
Sbjct: 99 GSDSGAPQGSSSSSSSEAMREMIFHIAALQ 128
>06_01_0230 +
1765913-1766251,1766365-1766445,1766553-1766651,
1766748-1766837,1766937-1767000,1767093-1767193,
1767284-1767393,1767515-1767758,1767852-1768052,
1768296-1768487,1768594-1768680,1768790-1768918,
1769276-1769392
Length = 617
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 363 IIGDPARVEFTEICMK--LGWKAPRTPWDILPLVLSADGKDP 482
++G PA E CM L WK P W+ + L L G P
Sbjct: 558 VVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAP 599
>04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271
Length = 375
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 673 HPISVPMYQPLKELAVNSRPP 611
HPIS MY P+KEL + PP
Sbjct: 323 HPISTRMYGPIKELLSDENPP 343
>11_06_0161 + 20811333-20811826,20812731-20812773,20813012-20813137
Length = 220
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 321 QLINYAGYQEPDGSIIGDPARVEFTEICMKLGWKAPRTPWDILPLVLSADGK 476
QL+N A E G + GD AR +KL ++AP PW++ L + D K
Sbjct: 147 QLVNAAKLDE--GVVAGDSARYN---AFLKLQYRAPEIPWEMYTLDTTIDLK 193
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 315 NPQLINYAGYQEPDGSIIGDPARVEFTEICMKLGWK 422
NP+L+ Y Y P G+II P + T C+ +K
Sbjct: 12 NPKLMAYVEYYSPTGAIIALPVTITTTASCIYWSFK 47
>04_01_0303 +
4132988-4133184,4133701-4134202,4134261-4134638,
4134657-4135301
Length = 573
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 387 EFTEICMKLGWKAPRTPWDILPLVLSA 467
+F EIC G KAP PW + V SA
Sbjct: 59 QFLEICSTNGHKAPSRPWTLTSYVRSA 85
>07_03_0056 -
12863599-12863715,12864107-12864235,12864322-12864408,
12864657-12864848,12864930-12865106,12865174-12865420,
12865510-12865619,12865751-12865851,12865937-12866000,
12866433-12866522,12866621-12866719,12866817-12866897,
12867197-12867535
Length = 610
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 375 PARVEFTEICMK--LGWKAPRTPWDILPLVLSADGKDP 482
PA E + CM L WK P W+ + L L +G P
Sbjct: 555 PAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQP 592
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 285 TDGKHDYRIWNPQLINYAGYQEPDGSIIGD 374
T KH R+W+P N EPDG I D
Sbjct: 287 TADKHIVRVWDPNTGNNMTSIEPDGGTIND 316
>03_04_0174 - 18044516-18046327
Length = 603
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -1
Query: 610 QSSLMLETAGKAYHFQPMSLNQSYSGCSNCTSITISLGSSKNSG-SFPSAESTSGKMSHG 434
Q + LE G + F +++ +S S+ G+ ++ P + +TS HG
Sbjct: 87 QPAAYLEECGNGHQFY---MDEDFSSSSSSRQFHSGTGAPSSAPVPPPPSATTSSAGGHG 143
Query: 433 VRGAFHPSFIQISVNSTRAGSPIMLPSGS 347
+ A SF Q+ ++ GSP +PS S
Sbjct: 144 LFEAADFSFPQVDISLDFGGSP-AVPSSS 171
>02_05_0227 -
26994462-26994591,26994714-26994803,26994895-26995022,
26995179-26995573,26995666-26995792,26995909-26995986,
26996096-26996198,26996315-26996589,26996700-26996726
Length = 450
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 694 LSSQRFLHPISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSLNQSYSGC 530
L+ Q F +S P+ Q K LA +SRP SS + GK + + GC
Sbjct: 310 LNGQNFRQKVSAPLAQ--KHLAPSSRPKPSSAVHNDHGKGKTRRLVKRKSKEDGC 362
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = -1
Query: 670 PISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSLNQSYSGCSNCTSITISLGSS 491
P S P P + +S SS +LET+ + PM + + + G C S++ +L
Sbjct: 2609 PPSTPT-TPNDSASGDSSTSNSSKVLETSRRRRIEGPMHVLRGHLGEVTCCSVSSAL--- 2664
Query: 490 KNSGSFPSAESTSGKMSHGVR 428
G S+ STSG + H +R
Sbjct: 2665 ---GLVASSSSTSGVLLHNLR 2682
>11_06_0729 - 26721730-26722797
Length = 355
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 643 LKELAVNSRPPQSSLMLETAGKAYHFQPMSLN 548
L+ L + S PP S ++ K YH Q +S+N
Sbjct: 39 LRYLGIMSPPPHSLILPAEFSKLYHLQELSVN 70
>04_04_0002 + 22082633-22083574,22083691-22084137,22084354-22084974
Length = 669
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -2
Query: 225 CDCTMLRTYRLLWSLLCNRISVTFSTVFFRCTWSHYAKPTWPRT-PIPKF*VDTFLFLSI 49
C C M + +LC ST+ + HY P W RT P P ++ F
Sbjct: 557 CSCNMFESA----GILCRHGLRVLSTLNYFQIPDHYLPPRWRRTWPSPSKALNGAYFHES 612
Query: 48 PSSLRLTSLCGLLSSL 1
P R+ +L ++S+L
Sbjct: 613 PEIGRVKALQSMVSAL 628
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 480 PEFFELPKEIVMEVQFEHPEYDWFKDMGWKWYALPAVSNMRLDCG 614
P+ EL I + + +P +D+ GWKW P +S + G
Sbjct: 427 PDIEELKNAIDITERKGNPAWDFDATDGWKWMITPPISRKAVVTG 471
>01_01_1187 + 9444742-9445317
Length = 191
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 106 SWLGVMRPGASEEYSGKSYRYSIA 177
SW+G + A+ Y G SYR S+A
Sbjct: 78 SWVGTIAGSAATAYEGTSYRLSLA 101
>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
Length = 542
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 586 AGKAYHFQPMSLNQSYSGCSNCTSITISLGSSKNSG 479
AG F P+ L +SY S TS T+S SS +SG
Sbjct: 310 AGLQEKFPPVPLLKSYLADSKKTSCTVSDNSSTSSG 345
>06_03_0988 +
26642247-26642506,26642790-26642872,26643150-26643238,
26643478-26643551,26643783-26643833,26644512-26644588,
26644694-26645313
Length = 417
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -1
Query: 562 PMSLNQSYSGCSNCTSITISLGSSKNSGSFPSAESTS 452
P S +Y GCS+ ++ ++G+S +SGS ++ S+S
Sbjct: 306 PASAFDTY-GCSSGVNVDFTMGTSSHSGSNSNSSSSS 341
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -1
Query: 709 TIFSRLSSQRFLHPISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSLNQSYSGC 530
++F + +FLH S + + + + +N P + + G AY+ P L +SY
Sbjct: 217 SVFFKEGLHQFLHCCS--LLELIIIVVINGVPIAGEVFRDIVGSAYYIAPEVLKRSYGPE 274
Query: 529 SNCTSITISL 500
++ SI + L
Sbjct: 275 ADIWSIGVML 284
>05_05_0082 + 22252993-22255617
Length = 874
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 237 TNKGNIRSAITIFPQRTDGKHDYRIWNPQLINYA 338
+ KGNI SA +F ++TD D WN + YA
Sbjct: 548 SRKGNIDSAQIVFERQTD--RDLVSWNSMISGYA 579
>01_05_0600 +
23566223-23566355,23567752-23567855,23567958-23568053,
23568134-23568253,23568543-23568710,23568921-23569012,
23569739-23569857,23570547-23570670,23570801-23570924,
23571291-23571359,23571470-23571561,23571645-23571722,
23571927-23571994,23572073-23572209
Length = 507
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 144 IQWKKLQIFDCREVTTASGMFEALCNHIKYATNKGNIR 257
I K + D EV T++ CN + Y+++KG+IR
Sbjct: 266 IDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIR 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,435,185
Number of Sequences: 37544
Number of extensions: 485309
Number of successful extensions: 1407
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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