Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30763
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)                132   6e-61
SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_29913| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)              29   2.9  
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)                     29   5.0  
SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  28   6.6  
SB_58896| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   8.8  

>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
          Length = 465

 Score =  132 bits (320), Expect(2) = 6e-61
 Identities = 53/95 (55%), Positives = 75/95 (78%)
 Frame = +3

Query: 255 RSAITIFPQRTDGKHDYRIWNPQLINYAGYQEPDGSIIGDPARVEFTEICMKLGWKAPRT 434
           RS IT+FP R +   D+R+WN QLI YAGY++PDGS+IGDPA +E TEIC+ LGWK    
Sbjct: 371 RSTITVFPHRREPHKDFRVWNTQLIQYAGYKQPDGSVIGDPAGLELTEICVALGWKPKGG 430

Query: 435 PWDILPLVLSADGKDPEFFELPKEIVMEVQFEHPE 539
            +D+LPLVL A G+ PE+FE+P+++++EV+ +HP+
Sbjct: 431 RFDVLPLVLQAGGERPEYFEIPEDLILEVKLKHPK 465



 Score =  120 bits (288), Expect(2) = 6e-61
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = +3

Query: 6   NSEAHKARLDEVKRELKEKGTYQLKTSELVFGAKLAWRNATRCIGRIQWKKLQIFDCREV 185
           NS AH+ RL EV ++++  G+Y L   EL+FGA++AWRNA+RCIGRIQW +L +FD R+V
Sbjct: 253 NSPAHEKRLAEVLKDIEATGSYDLTEKELMFGARMAWRNASRCIGRIQWNRLHLFDARDV 312

Query: 186 TTASGMFEALCNHIKYATNKGNIR 257
            TA GM+EA+  HIKY TNKGNIR
Sbjct: 313 FTARGMYEAIIRHIKYGTNKGNIR 336


>SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 35/58 (60%), Positives = 44/58 (75%)
 Frame = +3

Query: 540 YDWFKDMGWKWYALPAVSNMRLDCGGLEFTANSFNGWYMGTEIGCRNLCDESRLNIVE 713
           YDWF+++G +WYALPAVS + LD GG+EF    FNGWYM TEIG R+L D  R N++E
Sbjct: 2   YDWFEELGLRWYALPAVSCLCLDVGGIEFPGCPFNGWYMVTEIGARDLGDPCRYNMLE 59


>SB_29913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 537 EYDWFKDMGWKWYALPAVSNMRLDCGGLEFTANSF 641
           E  WF    WK++ALPA     + CG  +    SF
Sbjct: 55  EVRWFSARVWKFHALPARHGSAMQCGTSKGIQESF 89


>SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)
          Length = 392

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +3

Query: 171 DCREVTTASGMFEALCNHIKYATNKGNIRSAITI-FPQRTDGKHDYRIWNPQLINYAGYQ 347
           D + +T +  + E   +H K+  +K +  +A  +    R  G  D   W P +++Y GY 
Sbjct: 272 DVKTLTLSRFILETTLHHYKFIVHKPSFLAAACLRLALRMKGCDD---WTPTVVHYTGYS 328

Query: 348 --EPDGSII 368
             + DG +I
Sbjct: 329 VAQLDGCVI 337


>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 567 KWYALPAVSNMRLDCGGLEFTANSFNGWYMGT 662
           K    P++S   LDCG   F    F G Y GT
Sbjct: 36  KMQTFPSMSKNALDCGIKTFKQEGFKGLYAGT 67


>SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)
          Length = 652

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -1

Query: 247 PLFVAYLM*LHNASNIPLAVVTSLQSNICNFFHCILPMHLVALRQANLAPNTNSEV 80
           P  V +   +    N+ +   TSL    C F HC    +L+A   +NL+ +T   +
Sbjct: 32  PKLVTWEEVIEEDPNVKIPEHTSLCLENCTFRHCKAVRYLMATNDSNLSTSTKRSI 87


>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +3

Query: 324 LINYAGYQEPDGSIIGDPARVEFTEICMKLGWKAPRTPWDILPLVLSADGKDPEFFELPK 503
           +IN AG++   G +    A  +    C  +G  +     + L LVL  DG D +  +L K
Sbjct: 375 IINVAGHRLSTGEMEEVVAGHDAVAECAVIGQNSALKGEEPLGLVLLKDGVDIDEEQLKK 434

Query: 504 EIVMEVQ 524
           E+V  V+
Sbjct: 435 ELVQRVR 441


>SB_58896| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 352

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 428 RRFPSKFHTNLCKFNSCWISYNASIWLLVSCIIDKLRIPY 309
           R F +K   N     +C ++Y+A+ W  +SC    L  PY
Sbjct: 280 RPFSTKDRDNDANSGNCAVTYHAA-WWFISCFDSSLNGPY 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,713,073
Number of Sequences: 59808
Number of extensions: 555923
Number of successful extensions: 1423
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)