Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30763
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    31   0.58 
At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containi...    29   2.3  
At5g01620.2 68418.m00078 expressed protein several hypothetical ...    29   4.1  
At5g01620.1 68418.m00077 expressed protein several hypothetical ...    29   4.1  
At4g36990.1 68417.m05241 heat shock factor protein 4 (HSF4) / he...    29   4.1  
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    28   7.2  
At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containi...    28   7.2  
At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A...    28   7.2  
At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A...    28   7.2  
At1g21326.1 68414.m02666 VQ motif-containing protein contains PF...    28   7.2  
At1g21320.1 68414.m02664 VQ motif-containing protein contains PF...    28   7.2  
At1g09600.1 68414.m01077 protein kinase family protein contains ...    28   7.2  
At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12) ...    27   9.5  
At5g54400.1 68418.m06775 expressed protein                             27   9.5  
At4g26030.1 68417.m03748 hypothetical protein                          27   9.5  

>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -1

Query: 703 FSRLSSQRFLHPISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSLNQSYSGCSN 524
           +S  +S  F  P+S+P   P K LA+    PQ+  +      +  F P ++ +  S   +
Sbjct: 604 WSPKASNTFSEPLSLPQAYPGKSLALEPGNPQNPSLFGVDPDSGLFLPSTVPRFASSSGD 663

Query: 523 CTSITISLGSSKNSGSFPSA-ESTSGKMSHG 434
             +  +SL  S    S  S  + T+ ++ HG
Sbjct: 664 AEASPMSLTDSGFQNSLYSCMQDTTHELLHG 694


>At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 860

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 558 MGWKWYALPAVS--NMRLDCGGLEFTANSFNGW 650
           +GW++    A S  NM + CG L++    F+GW
Sbjct: 89  LGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGW 121


>At5g01620.2 68418.m00078 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 449

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 90  LVFGAKLAWRNATRCIGRIQWKKLQIFDCREVTTASGMFEALCNHIKYATNKGNIRSAIT 269
           L+F   L WR  +    +++W   +   C EV +A GM  A+ +   +  N  +      
Sbjct: 273 LIFNTYLWWRQDSV---KLRWSSEEKGSCEEVKSAEGMEMAMDSWGDWVANNVDPNKKRV 329

Query: 270 IFPQRTDGKHDYRIWNP 320
            F   +      R WNP
Sbjct: 330 FFVTMSPTHQWSREWNP 346


>At5g01620.1 68418.m00077 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 449

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 90  LVFGAKLAWRNATRCIGRIQWKKLQIFDCREVTTASGMFEALCNHIKYATNKGNIRSAIT 269
           L+F   L WR  +    +++W   +   C EV +A GM  A+ +   +  N  +      
Sbjct: 273 LIFNTYLWWRQDSV---KLRWSSEEKGSCEEVKSAEGMEMAMDSWGDWVANNVDPNKKRV 329

Query: 270 IFPQRTDGKHDYRIWNP 320
            F   +      R WNP
Sbjct: 330 FFVTMSPTHQWSREWNP 346


>At4g36990.1 68417.m05241 heat shock factor protein 4 (HSF4) / heat
           shock transcription factor 4 (HSTF4) identical to heat
           shock transcription factor 4 (HSF4) SP:Q96320 from
           [Arabidopsis thaliana]
          Length = 284

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 610 QSSLMLETAGKAYHFQPMSLNQSYSGCSNCTSITISLGSSKNSGS 476
           + S++  TAGK       S + S  G  + +S T S GSSKN GS
Sbjct: 104 RKSVIASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGS 148


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 703 FSRLSSQRFLHPISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSL 551
           F++    +F  P+    ++PL + A  SRPPQ   M+  A  A   Q M L
Sbjct: 809 FAKCMGSQF-EPVFAQFFEPLMKFAKASRPPQDRTMV-VASLAEVAQDMGL 857


>At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 225

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +3

Query: 360 SIIGDPARVEFTEICMKLGWKAPRTPWDILPLVLSADGKDPEFFELPKEIVMEVQFEHPE 539
           S++ +  R     +CMK+ W  P   +    L + A+ +      L  E+V    +  P+
Sbjct: 40  SVLAEFQRQNQVFLCMKVNWSPPVRKFGCFDLEIGAEMEPKTKCGLLYEVVRREIWYRPD 99

Query: 540 YDWFKDM 560
             +++DM
Sbjct: 100 MFFYRDM 106


>At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A
           (PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
           regulatory subunit of phosphatase 2A (GI:710330)
           [Arabidopsis thaliana]; similar to type 2A protein
           serine/threonine phosphatase 55 kDa B regulatory
           GI:1408460 [Arabidopsis thaliana]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
          Length = 512

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 153 KKLQIFDCREVTTASGMFEALCNHIKYATNKGNIR 257
           K  ++ D  EV T++      CN + Y+++KG+IR
Sbjct: 274 KPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIR 308


>At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A
           (PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
           regulatory subunit of phosphatase 2A (GI:710330)
           [Arabidopsis thaliana]; similar to type 2A protein
           serine/threonine phosphatase 55 kDa B regulatory
           GI:1408460 [Arabidopsis thaliana]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
          Length = 513

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 153 KKLQIFDCREVTTASGMFEALCNHIKYATNKGNIR 257
           K  ++ D  EV T++      CN + Y+++KG+IR
Sbjct: 275 KPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIR 309


>At1g21326.1 68414.m02666 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 239

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -1

Query: 673 HPISVPMYQPLKELAVNSRPPQSSLMLETAG-KAYHFQPMSLNQSYSGCSNCTSITISLG 497
           HP   P     +E +  SRPP   +++ T   +  H  P +        +  TS + +  
Sbjct: 38  HPQPQPPQTHQQEPS-QSRPPPGPVIIYTVSPRIIHTHPNNFMTLVQRLTGKTSTSTTSS 96

Query: 496 SSKNSGSFPSAESTSGKMSHGV 431
           S  +S S P   ST    SHG+
Sbjct: 97  SYSSSTSAPKDASTMVDTSHGL 118


>At1g21320.1 68414.m02664 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 235

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -1

Query: 673 HPISVPMYQPLKELAVNSRPPQSSLMLETAG-KAYHFQPMSLNQSYSGCSNCTSITISLG 497
           HP   P     +E +  SRPP   + + T   +  H  P +        +  TS + +  
Sbjct: 38  HPQPQPPQTHQQEPS-QSRPPPGPVNIYTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSS 96

Query: 496 SSKNSGSFPSAESTSGKMSHGV 431
           SS +S S P   ST    SHG+
Sbjct: 97  SSSSSTSEPKDTSTMVDTSHGL 118


>At1g09600.1 68414.m01077 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 714

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
 Frame = -1

Query: 670 PISVPMYQPLKELAVNSRPPQSSLMLETAGKAYHFQPMSLNQSY-----SGCSNCTSITI 506
           P S+P YQP KE+ V ++  ++    +T+ K    + +S          S   + TSI  
Sbjct: 456 PSSLPKYQPRKEIDVKAQEEEAKRKKDTSSKQNDSKQVSRESKAVPAPDSNAESLTSIQK 515

Query: 505 SLGSS---KNSGSF-PSAESTSGKMSHGVRGAFHPSFIQISVNS-TRAGSPIMLPS 353
             G      NS  F P  ++ S ++     G       +  V+S  R G  +M+ S
Sbjct: 516 RQGQHNQVSNSDKFNPGEDAASFRIEPLKSGTAKDGHTRYGVSSVNRNGENVMMGS 571


>At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12)
           Asp48; almost identical to cucumisin-like serine
           protease (ARA12) GI:3176874 from [Arabidopsis thaliana]
          Length = 757

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 592 ETAGKAYHFQPMSLNQSYSGCSNCTSITISLGSSKNSG--SFPSAESTSGK 446
           ET G     +P  LN   +      ++T ++ SSK SG  SF S E + GK
Sbjct: 695 ETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGK 745


>At5g54400.1 68418.m06775 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 101 GQVGLA*CDQVHRKNTVEKVTDIRLQRSDHSKRYVRSIVQSHQIRYE 241
           G VG+   D VH    V ++ ++R++    SKR    +V+SH + ++
Sbjct: 229 GGVGVV-WDLVHVPEYVRRLQELRMEEIRVSKRVTAFMVKSHMVSFK 274


>At4g26030.1 68417.m03748 hypothetical protein 
          Length = 220

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 468 DGKDPEFFELPKEIVMEVQFEHPEYDWFKDMGWKWYALPAVSNMRLDC 611
           +G+  ++   P E++ E+   H E D+ KD GW  Y+LP   +    C
Sbjct: 117 NGRSVKYICKPTEVLEEI---HDEIDYEKDGGW-IYSLPFEKDSSFIC 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,270,389
Number of Sequences: 28952
Number of extensions: 392225
Number of successful extensions: 1185
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)