Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30757
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.68 
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    28   1.2  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    27   2.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.8  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    25   6.3  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   6.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.4  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   8.4  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 6   PSFMTWRRVLLEEPFLIIEHGVVK--GLHYLLKNGILIHLSRCFDTFFTKV 152
           P+ + W+ +   EPFL+ +    K   L YLL  G+LI++  C  T F  V
Sbjct: 74  PAKIAWQAMTTREPFLVYQAKADKKISLIYLLTVGMLINV--CVITSFASV 122


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -3

Query: 513 ILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLK------ENRVVKSKQLLKRYV 352
           ++SR +++  R +  I+   L  A Y  RTG   TD         E+  +K  Q  K +V
Sbjct: 165 VISRLIQLLSRGIYVII---LTAAGYPSRTGQEYTDRFSGLLQAIEDSDLKDGQKRKLHV 221

Query: 351 KGGHRNFLF 325
            GG  N+LF
Sbjct: 222 LGGESNYLF 230


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 378 SKQLLKRYVKGGHRNFLFTDVK--MFTIEQHFKKQNDRIYAQSSKEASQLVDRVQRVHYP 205
           +KQ++ R      R+F++ D+K   F I     K  + IYA     A Q  D    VH P
Sbjct: 115 AKQMITRIQSVHERHFIYRDIKPDNFLIGFPGSKTENVIYAVDFGMAKQYRDPKTHVHRP 174


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 393 NRVVKSKQLLKRYVKGGHRNFLFTDVKMFTIEQHFKKQND 274
           N V+  +   KR+++ G+RN +  D+K+  I +     ND
Sbjct: 413 NYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDND 452


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 348 P*RTASVVVSILPPYSLLNYQLRNDQYVSYRLQVLSHLLKY 470
           P + ASV++ ++  +   N  +R DQY+   L+ +S +L Y
Sbjct: 226 PCKHASVLLKLIKQHRERNDPIRVDQYMVLFLKFVSTMLPY 266


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 417 FLTDNLKENRVVKSKQLLKRYVKGGH--RNFLFTD 319
           ++   +KE+R+   +QLLK+Y +G H   NF  TD
Sbjct: 264 YMNYRIKEDRLKVLQQLLKKY-EGRHNFHNFTVTD 297


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 564 SKAVRERIRRNPVRKQKILSREMKIAP 484
           +KA++++ RR P + ++ L+R + I P
Sbjct: 95  TKAIKQKSRREPSKFERSLARPLCITP 121


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 546 RIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLA 442
           R RRN VRK   LSR+ ++  R +     DD+ LA
Sbjct: 485 RRRRNAVRKDPKLSRQPQVG-RLLEENSVDDIPLA 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,409
Number of Sequences: 5004
Number of extensions: 49231
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)