Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30757
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47... 31 0.53
12_02_1081 + 25914180-25914371,25918121-25919104 29 3.7
12_01_0189 + 1397068-1397241,1397713-1397804,1398456-1398546,139... 28 6.5
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 28 6.5
09_06_0346 + 22435164-22435491,22435990-22436114,22436402-224365... 27 8.6
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 27 8.6
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130... 27 8.6
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 27 8.6
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 27 8.6
>03_01_0057 +
476172-476283,476337-476449,476532-476634,477089-477210,
477303-477497,477627-477701,478082-478179,478328-478421
Length = 303
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/71 (21%), Positives = 36/71 (50%)
Frame = -3
Query: 573 KRWSKAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLKE 394
K+ K++RE +RN + K L++E+ + + ++R+ ++ L + G +
Sbjct: 56 KKVEKSIREAAKRNDIGSAKALAKEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTV 115
Query: 393 NRVVKSKQLLK 361
+ KS +++K
Sbjct: 116 GHLSKSTEVMK 126
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = -3
Query: 432 RRTGHFLTDNLKENRVVKSKQLLKRYVKGGHRNFLFTDVKMFTIEQHFKKQNDRIYAQSS 253
R T H T++ +S LL G H +F F D+K F + DR+ S
Sbjct: 266 RATAHVFTEHTLYRHSRQSNLLLAD--AGWHCSFCFKDIKEFAFKMKAYSHADRVKQDSF 323
Query: 252 KEASQLVDRVQRV 214
DR+QRV
Sbjct: 324 LNP----DRIQRV 332
>12_01_0189 +
1397068-1397241,1397713-1397804,1398456-1398546,
1398931-1399052,1399142-1399289,1399596-1399665,
1400465-1400517,1400678-1400822,1401308-1401426,
1401480-1401527,1401528-1401599,1401902-1402024,
1402025-1402131,1402437-1402547,1402585-1402777,
1402959-1403129,1403548-1403673
Length = 654
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 342 DLP*RTASVVVSILPPYSLLNYQLRNDQY 428
+LP A V+ ++LPP+S ++ L DQY
Sbjct: 620 ELP-NAAEVMEAVLPPFSFTSFDLALDQY 647
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 573 KRWSKAVRERIRRNPVRKQKILSREMKIA 487
KRW ++ R++IRR RK K L E I+
Sbjct: 548 KRWKRSTRKKIRRAYFRKNKGLLLEQLIS 576
>09_06_0346 +
22435164-22435491,22435990-22436114,22436402-22436514,
22436919-22437023,22437147-22437531,22437645-22437776,
22437980-22438450,22438550-22439278,22439579-22439767
Length = 858
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 179 FSYEGVTEPYFCEKGIKTSAQVYQDTILEKVVKPLNNTMFNNQEWFFQQ 33
F+YEG + ++G KTS Y +++ P N F QEW +Q
Sbjct: 809 FTYEGEAIKDWLQRGHKTSPMTYLSFTHYELI-PNNALRFAIQEWQMKQ 856
>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 543 IRRNPVRKQKILSREMKIAPRTMSRILKDDLGLA--AYKRRTGHF 415
I R K IL+ +++AP RIL DD +A A + GHF
Sbjct: 1155 IGRTGAGKSSILNALLRLAPICNGRILVDDFDVAKLAVRDLRGHF 1199
>03_02_0790 -
11212540-11212698,11212777-11212873,11212974-11213030,
11213291-11213379,11213463-11213549,11213820-11213935,
11214026-11214281,11214361-11214510,11214948-11215106,
11215456-11215493,11215972-11216063,11216528-11216682,
11217185-11217253
Length = 507
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 369 VVSILPPYSLLNYQLRNDQY--VSYRLQVLSHLLKYA 473
+++I+P Y +LN+ L Y VS+RL L++ LK A
Sbjct: 434 LLTIIPNYPMLNFMLTTAIYVAVSHRLFELTNTLKIA 470
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 60 EHGVVKGLHYLLKNGILIHLSRCFDTFFTKVW 155
+H ++ G+ L K +L+H+SR T VW
Sbjct: 179 DHEIIIGVDTLGKEDLLLHISRALQTKVIWVW 210
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 369 VVSILPPYSLLNYQLRNDQY--VSYRLQVLSHLLKYA 473
++S +P Y LLN+ L Y +SYR+ L+ +LK A
Sbjct: 468 LLSFIPGYPLLNFMLATAIYLLISYRVFELTGVLKSA 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,932
Number of Sequences: 37544
Number of extensions: 281947
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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