Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30757
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)           40   0.002
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           40   0.002
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_45484| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)                 28   5.0  
SB_25559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)
          Length = 221

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = -3

Query: 558 AVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLKENRV 385
           AVR+ + R+P +  +  S+E+ +   ++ R+L  DL L  YK +  H L+D  KE RV
Sbjct: 87  AVRDSVGRSPRKSVRRRSQELGMTRESLRRVLTSDLHLYPYKIQIKHKLSDADKEKRV 144


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
 Frame = -3

Query: 558 AVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLKENRVVK 379
           AVR+ +  +P +  +  S+E+ +   ++ R+L  DL L  YK +    LTD  KE RV  
Sbjct: 488 AVRDSVGCSPRKSVRRRSQELGMTRESLRRVLTSDLHLYPYKIQIKPKLTDADKEKRVTM 547

Query: 378 SKQLLKRYVKGGHRNFL----FTDVKMFTIEQHFKKQNDRIYAQSSKE 247
            K      V     NFL    F+D   F +  H   +N+  +     E
Sbjct: 548 CKWFCN--VLENDENFLENVWFSDEAHFLLSGHVNTKNNIFWGSKVPE 593


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 408 DNLKENRVVKSKQLLKRYVKGGHRNFLFTDVKMFTIEQHFKKQNDRIYAQSSKEASQ 238
           + LK+   ++ +QLLK   +  HR  L    K+    QH K Q +++  Q  +E  Q
Sbjct: 384 ERLKQQEEIRHRQLLKEQEELKHRKLLQEQQKL----QHKKLQEEKLKHQKQEEEQQ 436


>SB_45484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 342 HRNFLFTDVKMFTIEQHF-KKQNDRIYAQSSKEAS 241
           H N    DV  FT E  F KK+ ++++A SS+  S
Sbjct: 10  HSNLHMNDVNSFTQESRFKKKRKEQLFAHSSERRS 44


>SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
 Frame = -3

Query: 471 RILKDDLGLAAYKRRTGHFLTDN-------LKENRV---VKSK-QLLKRYVKGGHRNFLF 325
           R L  ++G+A      G  LTDN       L E+ V   VK   Q  + Y++G   +  +
Sbjct: 250 RFLVQEMGIANDGEDAGRLLTDNAVDGGSGLGEHNVPPVVKDAIQRHREYIRGQKNDLPY 309

Query: 324 TDVKMFTIEQHFKKQND 274
           T ++ +   Q++K  ND
Sbjct: 310 TKLEQYLNNQYWKNNND 326


>SB_25559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
 Frame = -1

Query: 167 GVTEPYFCEKGIKTSAQVYQDTILEKVVKPL-----------NNTMFN-NQEWFFQQDSA 24
           G++  +F  +G   S   Y D ILEK V+PL              +F+ NQ   F QD A
Sbjct: 5   GLSNLHFIPRGQMISED-YVDKILEKEVRPLMSRRSHTQDPTKTKLFSVNQNVTFVQDCA 63

Query: 23  PGHKAR 6
           P H A+
Sbjct: 64  PAHTAK 69


>SB_4875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 318 HP*TKNFYDLP*RTASVVVSILPPYSLLNYQLRN 419
           HP TK  Y L   T S++    PP+  L+  LRN
Sbjct: 391 HPCTKLRYPLRTNTESLLAEHQPPFHFLDRNLRN 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,639,867
Number of Sequences: 59808
Number of extensions: 338034
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)