Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30757
         (596 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55039-1|CAA38879.1|  599|Homo sapiens centromere autoantigen B ...    30   5.4  
X05299-1|CAA28918.1|  594|Homo sapiens CENP-B protein.                 30   5.4  
BC053847-1|AAH53847.1|  599|Homo sapiens centromere protein B, 8...    30   5.4  
AL109804-11|CAC17547.1|  599|Homo sapiens centromere protein B, ...    30   5.4  
AF002713-1|AAB70165.1|  125|Homo sapiens centromere protein B pr...    30   5.4  

>X55039-1|CAA38879.1|  599|Homo sapiens centromere autoantigen B
           (CENP-B) protein.
          Length = 599

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 564 SKAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTG 421
           S+ ++E +  NP  ++  ++R   I P T+S ILK+   + A +R+ G
Sbjct: 14  SRIIQE-VEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60


>X05299-1|CAA28918.1|  594|Homo sapiens CENP-B protein.
          Length = 594

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 564 SKAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTG 421
           S+ ++E +  NP  ++  ++R   I P T+S ILK+   + A +R+ G
Sbjct: 9   SRIIQE-VEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 55


>BC053847-1|AAH53847.1|  599|Homo sapiens centromere protein B,
           80kDa protein.
          Length = 599

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 564 SKAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTG 421
           S+ ++E +  NP  ++  ++R   I P T+S ILK+   + A +R+ G
Sbjct: 14  SRIIQE-VEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60


>AL109804-11|CAC17547.1|  599|Homo sapiens centromere protein B,
           80kDa protein.
          Length = 599

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 564 SKAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTG 421
           S+ ++E +  NP  ++  ++R   I P T+S ILK+   + A +R+ G
Sbjct: 14  SRIIQE-VEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60


>AF002713-1|AAB70165.1|  125|Homo sapiens centromere protein B
           protein.
          Length = 125

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 564 SKAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTG 421
           S+ ++E +  NP  ++  ++R   I P T+S ILK+   + A +R+ G
Sbjct: 14  SRIIQE-VEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,253,206
Number of Sequences: 237096
Number of extensions: 1570387
Number of successful extensions: 3444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3444
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)