Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30757
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profi...    32   0.25 
At5g22950.1 68418.m02683 SNF7 family protein contains Pfam domai...    30   1.3  
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ...    27   7.2  
At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701...    27   7.2  
At3g56410.2 68416.m06274 expressed protein                             27   9.5  
At3g56410.1 68416.m06273 expressed protein                             27   9.5  
At1g29890.1 68414.m03653 acetyltransferase-related low similarit...    27   9.5  

>At3g45000.1 68416.m04848 SNF7 family protein contains Pfam profile
           PF03357: SNF7 family
          Length = 200

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/67 (22%), Positives = 36/67 (53%)
 Frame = -3

Query: 561 KAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLKENRVV 382
           KA+++ ++RN +   K L+RE+  + RT+ R+ ++   + +     G  +   +    + 
Sbjct: 19  KAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLS 78

Query: 381 KSKQLLK 361
           KS +++K
Sbjct: 79  KSGEVMK 85


>At5g22950.1 68418.m02683 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 229

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = -3

Query: 561 KAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLKENRVV 382
           KA++E  +RN +   K L++E+  + RT++R+ ++   + +     G  +        + 
Sbjct: 48  KAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLS 107

Query: 381 KSKQLLK 361
           KS +++K
Sbjct: 108 KSAEVMK 114


>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
           O-acetyltransferase [Homo sapiens] GI:17016934
          Length = 540

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 369 VVSILPPYSLLNYQLRNDQY--VSYRLQVLSHLLK 467
           ++SI+P Y +LN+ L    Y  VS+RL  L++ LK
Sbjct: 468 LLSIIPGYPMLNFMLTTAIYVLVSHRLFELTNTLK 502


>At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701:
           Plant protein of unknown function (DUF827)
          Length = 446

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 579 VRKRWSKAVRERIRRNPVRKQKILSREMKIAPRTMSRILKDDLGL 445
           +R    + V E   RNP++   +++ EMK A   + + + DDL L
Sbjct: 131 LRSHSKEMVDEHCHRNPLKSPDLMTMEMKQAGMNLCKTM-DDLAL 174


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -3

Query: 387 VVKSKQLLKRY----VKGGHRNFL--FTDVKMFTIEQHFKKQNDRIYAQSSKEASQLVDR 226
           V+ S+++L+ +    +K   RN    F D+K+  ++ H K   +R  ++    +S+ +  
Sbjct: 485 VILSQKILETFEDKGIKEDIRNISTKFLDLKLEALQPHLKPMGNRRLSEQQPTSSETIGE 544

Query: 225 VQRVHYPTS 199
             ++H   S
Sbjct: 545 TSKIHLEQS 553


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -3

Query: 387 VVKSKQLLKRY----VKGGHRNFL--FTDVKMFTIEQHFKKQNDRIYAQSSKEASQLVDR 226
           V+ S+++L+ +    +K   RN    F D+K+  ++ H K   +R  ++    +S+ +  
Sbjct: 438 VILSQKILETFEDKGIKEDIRNISTKFLDLKLEALQPHLKPMGNRRLSEQQPTSSETIGE 497

Query: 225 VQRVHYPTS 199
             ++H   S
Sbjct: 498 TSKIHLEQS 506


>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
           to O-acetyltransferase [Cryptococcus neoformans var.
           neoformans] GI:17063556
          Length = 470

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 366 VVVSILPPYSLLNYQLRNDQY--VSYRLQVLSHLLK 467
           +++SI+P Y +LN+ L    Y  VS RL  L++ LK
Sbjct: 397 LLLSIIPEYPMLNFMLTTAIYVLVSVRLFELTNTLK 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,387
Number of Sequences: 28952
Number of extensions: 243915
Number of successful extensions: 580
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)