Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30755
         (506 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.024
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    38   0.13 
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    35   0.92 
UniRef50_Q2J794 Cluster: Ribonuclease BN; n=3; Frankia|Rep: Ribo...    34   2.1  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.024
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -2

Query: 250 AGWWYLPVRTHKRSYHQ 200
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep:
          Like moricin - Manduca sexta (Tobacco hawkmoth)
          (Tobacco hornworm)
          Length = 248

 Score = 37.9 bits (84), Expect = 0.13
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = -1

Query: 83 MADGNQSPSGGPYARLPTRA 24
          M DGN SPSG PYA LPTRA
Sbjct: 1  MGDGNHSPSGRPYASLPTRA 20


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.1 bits (77), Expect = 0.92
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -3

Query: 117  RLGSAPGIAEVHGRR 73
            RLGSAPGIAEVHGRR
Sbjct: 972  RLGSAPGIAEVHGRR 986


>UniRef50_Q2J794 Cluster: Ribonuclease BN; n=3; Frankia|Rep:
           Ribonuclease BN - Frankia sp. (strain CcI3)
          Length = 342

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 74  RRPWTSAMPGAEPSLVSTRTVTGVKTHYATLNFAHATLLNFLLVVGPLVSP 226
           RRPW  A+PGA  +LV     +GV  +Y  + F+H       LV G L SP
Sbjct: 253 RRPWWRALPGAILALVCWLVGSGVLRYYLEIVFSHE------LVYGSLGSP 297


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,646,681
Number of Sequences: 1657284
Number of extensions: 9368815
Number of successful extensions: 21627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21614
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)