Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30755
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    29   1.7  
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 4    FIYLFFIALVGRRAYGPPDGDWLPSAMDFSNARGRAKPRLDEDGD 138
            ++Y++      R    PP GDWLP       AR   K   DE+ D
Sbjct: 1479 YVYVYVYVRRRRSRRHPPVGDWLPRRDTHVMARRNGKRMSDEELD 1523


>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 1  FFIYLFFIALVGRRAYGPPDGD 66
          +   L F+  VGR+ +G PDGD
Sbjct: 6  YLFSLLFVVHVGRQVHGAPDGD 27


>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
 Frame = +2

Query: 35  ADEHTAHPMVIG-YRRPWTSAMPGAEPSLVSTRTVTG--VKTHYATLNFAHATLLNFLLV 205
           A  + A P V+  Y  P   + P   P  VS   V+   V   Y TL +     L  L V
Sbjct: 314 APSYVAQPYVVQLYVAPPYVSPPYVSPPYVSPPYVSPPYVSPPYVTLPYVTLPYLTLLYV 373

Query: 206 VGPLVSPHG*VPP 244
             P V+P    PP
Sbjct: 374 ATPYVTPPYVAPP 386


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,319
Number of Sequences: 59808
Number of extensions: 305792
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)