Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30755
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48050.1 68415.m06014 expressed protein ; expression supporte...    29   2.4  
At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con...    28   4.2  
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel...    27   5.5  
At2g27950.1 68415.m03388 expressed protein                             27   9.6  

>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +1

Query: 7    IYLFFIALVGRRAYGPPDGDWLPSAMDFS---NARGRAK 114
            ++L +I  + + +    DGDW+PSA DF+   NARG  K
Sbjct: 1092 LFLIYIFTLIQSSITVKDGDWVPSA-DFTSRRNARGSQK 1129


>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 533

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 LLNFLLVVGPLVSPHG*VPPPCPYLS*SRNAF 280
           LL  L++VGPLV+  G V PP P    SR  F
Sbjct: 13  LLWLLIIVGPLVNADGPVCPPKPSDKLSRAHF 44


>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
           helicase GI:4521249 from [Mus musculus]
          Length = 473

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 300 AVVTILETLELTYISRWVTHLHCRCLWVSLLVEPFVANDG 419
           A + + ET +LT I R   H H R L +  ++EP   ++G
Sbjct: 2   AELRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEG 41


>At2g27950.1 68415.m03388 expressed protein 
          Length = 767

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 74  RRPWTSAMPGAEPSLVSTRTVTGVKTHYATLNFAHATLLNFLL 202
           R+ W   +  AE  +   R + G+  H+A  NFAH   +  LL
Sbjct: 238 RQVWVDMLKMAE--MERQRELEGLMQHHAVSNFAHRNRIQALL 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,660,436
Number of Sequences: 28952
Number of extensions: 202677
Number of successful extensions: 422
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)