Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30753
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    38   4e-04
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   1.4  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   3.2  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   3.2  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    24   5.6  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    23   7.5  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    23   7.5  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    23   7.5  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    23   9.9  

>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 37.5 bits (83), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +2

Query: 56  STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 220
           ST+    F+R S+F   +    FF +  F++ + S+++  N G  W ++K ++ N
Sbjct: 22  STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 79 ENSTI*CRPQGHFENFLKKLETSS 8
          E+S++    +G F +FLKKLE SS
Sbjct: 25 ESSSVDVPVKGRFASFLKKLELSS 48


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 83  RTSTFALAVAGGTFFFERT 139
           R ST   A A GTFFF R+
Sbjct: 10  RCSTALSAAAAGTFFFRRS 28


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 144 SNVLSKKKVPPATAKANVDVRLKTVRFNVDHRDILKIFSKNSRL 13
           SN  S+K VPP+  +        T R   D+ D    FS++ RL
Sbjct: 455 SNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRL 498


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 144 SNVLSKKKVPPATAKANVDVRLKTVRFNVDHR 49
           +NV    K+P  TA     +R+ T+  NVD R
Sbjct: 367 TNVTYNAKIPMTTAALGGTLRVPTLTGNVDLR 398


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 83  RTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQ 238
           +T  F++A AG +  F+  F   ++ +  + N G   ++I  KY +   NVQ
Sbjct: 9   QTGRFSVA-AGPSVRFQAGFLAANRQVRFSSNHGVSLEEINTKYNDFFSNVQ 59


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 143 ELVSQSIFENLNKGKLWKDIKH 208
           E+ +++I++ LNK ++ K+ KH
Sbjct: 621 EIYNETIYDLLNKAEMLKNPKH 642


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 5   ERTSLEFFEKIFKMSLWSTLNRTVFKRTSTFALAVAG-GTFFF-ERTFE 145
           +++  + FEK  K+  W+TL  T   +     L + G GT  +  R F+
Sbjct: 113 QKSMEDLFEKTEKIQYWTTLLCTKHSQLFDLVLTLGGDGTVLYTSRLFQ 161


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 LNRYLKTSTKENYGRTSSTNM 215
           +N Y  TS  E  G  SSTN+
Sbjct: 28  VNEYSSTSKFETLGNQSSTNL 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 984,465
Number of Sequences: 5004
Number of extensions: 15597
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)