Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30753
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0241 - 19332540-19332635,19332931-19333023,19333743-193337...    32   0.099
08_02_0174 + 13769487-13770352,13770357-13770408,13770438-137707...    26   4.9  
06_02_0335 - 14591512-14591772,14594021-14594215,14594379-145946...    26   4.9  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    26   4.9  
12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621     26   6.5  
12_01_0803 + 7371349-7372146,7372301-7372675                           25   8.6  
10_08_1004 + 22170866-22171442,22172424-22173337,22173426-22173566     25   8.6  
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270...    25   8.6  
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185...    25   8.6  

>05_04_0241 -
           19332540-19332635,19332931-19333023,19333743-19333790,
           19333907-19333999
          Length = 109

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 44  MSLWSTLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGK 187
           M LW  L R V +R + +   V  G F  ER  +     ++E  N G+
Sbjct: 1   MGLWDALYRVVMRRNAVYVTFVVAGAFAGERAVDYGVHKVWEMNNIGE 48


>08_02_0174 +
           13769487-13770352,13770357-13770408,13770438-13770705,
           13770745-13771022,13771049-13771486
          Length = 633

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -2

Query: 111 ATAKANVDVRLKTVRFNVDHRD 46
           +TA AN+DVR  ++RF+++ ++
Sbjct: 602 STAGANIDVRTGSIRFHINGKE 623


>06_02_0335 -
           14591512-14591772,14594021-14594215,14594379-14594679,
           14594930-14595051,14595287-14595466,14595514-14596337,
           14596377-14596435,14596480-14597075
          Length = 845

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -2

Query: 111 ATAKANVDVRLKTVRFNVDHRD 46
           +TA AN+DVR  ++RF+++ ++
Sbjct: 433 STAGANIDVRTGSIRFHINGKE 454


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 34  NFQNVPVVDIKSYCFQTYIYVCFGCCR 114
           +F  VPV D   +C +    +C  CCR
Sbjct: 262 DFCKVPVFDYHRHCPRCLYDLCLDCCR 288


>12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621
          Length = 230

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/22 (36%), Positives = 19/22 (86%)
 Frame = -2

Query: 111 ATAKANVDVRLKTVRFNVDHRD 46
           +TA+AN+DV + ++RF+++ ++
Sbjct: 179 STAEANIDVGMGSIRFHINGKE 200


>12_01_0803 + 7371349-7372146,7372301-7372675
          Length = 390

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = -2

Query: 111 ATAKANVDVRLKTVRFNVDHRD 46
           +TA+A++DV  + +RF+++ +D
Sbjct: 169 STAEASIDVGARNIRFHINGKD 190


>10_08_1004 + 22170866-22171442,22172424-22173337,22173426-22173566
          Length = 543

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 76  FQTYIYVCFGCCRRN 120
           F T+++  FGCC++N
Sbjct: 522 FWTWLFSLFGCCKKN 536


>06_03_0007 -
           15325720-15325739,15326236-15326383,15326512-15327025,
           15327077-15327507
          Length = 370

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 111 ATAKANVDVRLKTVRFNVD 55
           +TA AN+DVR  ++RF+++
Sbjct: 124 STAGANIDVRTGSIRFHIN 142


>04_04_0477 +
           25517060-25517152,25517263-25517382,25518203-25518506,
           25518944-25519305,25519401-25519575,25520510-25520574,
           25520725-25520790,25521275-25521350,25521813-25521922
          Length = 456

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 198 SFHSFPLLRFSNID*DTNSNVLSKKKVPPATAKANVDVR 82
           + HS PL + +    ++  N    K+V P   KAN+D R
Sbjct: 304 AIHSIPLNKATASSVESQLNGHMTKQVQPVHEKANLDTR 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,621,716
Number of Sequences: 37544
Number of extensions: 77661
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)