Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30753
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16365| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.24 
SB_5519| Best HMM Match : WIF (HMM E-Value=4.6)                        27   3.9  
SB_53892| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_30693| Best HMM Match : Protamine_P1 (HMM E-Value=6.3)              26   5.1  
SB_14624| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.1  
SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.7  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             26   6.7  

>SB_16365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 106 SQSKRRCTFENSTI*CRPQGHFEN 35
           ++S RR +F+ S + C PQGH EN
Sbjct: 171 ARSLRRASFQKSQLKCYPQGHSEN 194


>SB_5519| Best HMM Match : WIF (HMM E-Value=4.6)
          Length = 347

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 77  FKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 220
           +KR     L   GGTF F   FE+ + S+  NL     +KD+   +++
Sbjct: 30  WKRIPISLLQSVGGTFLFYCDFEIKTLSL--NLKLPSFYKDVLRAWQD 75


>SB_53892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 59  TLNRTVF-KRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKD 199
           TL  T F K      +   G    +E T   ++ +IF  + +GK WKD
Sbjct: 77  TLEATQFTKPCPQLVIPSKGAKTLYETTENCLNLNIFVPVKEGKTWKD 124


>SB_30693| Best HMM Match : Protamine_P1 (HMM E-Value=6.3)
          Length = 250

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   RERTSLEFFEKIFKMSLWSTL 64
           RE+++LE+FE  F   +W  L
Sbjct: 112 REKSALEYFELFFDQEVWDCL 132


>SB_14624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 141 NVLSKKKVPP-ATAKANVDVRLKTVRFNVDHRDILKIFSKNS 19
           N L   K+ P    K   D+R+KTV+      +I K F KN+
Sbjct: 123 NELGMLKIDPKGCIKKPNDLRIKTVKQTTKSEEIAKQFEKNA 164


>SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 107 VAGGTFFFERTFELVSQSIFENLNKGKLWKD 199
           +   TF  E  FE  ++ +F NLN   LWKD
Sbjct: 1   MVSSTFQEEEQFE-DAKRLFNNLNDTPLWKD 30


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 50  LWSTLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWK 196
           +W   +  V K+     ++V G T     TFEL  Q +F   N    WK
Sbjct: 215 MWDDYSCEVPKKFILVCISVDGTTIPPNATFELQDQEVFLGSNAVLEWK 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,848,205
Number of Sequences: 59808
Number of extensions: 94342
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)