Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30753
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +2

Query: 122 FFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQFIS*FINLIKI 271
           +F   T E +   +F NLN G ++K +   + +  V +QF + FIN++ +
Sbjct: 5   YFHPETCENIG--LFSNLNCGDIYKKLGLLFADINVCLQFFTVFINILHL 52


>Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical
           protein F45H7.1 protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 74  VFKRTSTFALAVAGGTFFF 130
           V KR++TF+L +AG  FFF
Sbjct: 401 VAKRSNTFSLQLAGEFFFF 419


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 1   EREN*SRVF*ENFQNVPVVDIKSYCFQTYIYVCFGCCRRNFL 126
           +  N +  F E F N P  D++SYC   +      C   N L
Sbjct: 205 KEHNDAVTFYEEFNNCPFNDLESYCCTLFFVDRIECTTSNDL 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,413,872
Number of Sequences: 27780
Number of extensions: 84517
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)