Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30753
         (304 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04850.1 68417.m00707 K+ efflux antiporter, putative (KEA3) s...    28   1.0  
At5g23850.1 68418.m02800 expressed protein                             26   5.6  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    26   5.6  
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    25   7.4  
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta...    25   7.4  

>At4g04850.1 68417.m00707 K+ efflux antiporter, putative (KEA3)
           similar to A. thaliana K+ antiporter KEA1, GenBank
           accession number AF003382; Monovalent cation:proton
           antiporter family 2 (CPA2 family) member, PMID:11500563
          Length = 488

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 47  SLWSTLNRTVFKRTSTFALAVAGGTFFFERTFELVSQS 160
           S+W  L +   K      +   GG FF  R FE+V+++
Sbjct: 147 SIWPMLAKESAKALGGLGILSLGGKFFLRRIFEVVAET 184


>At5g23850.1 68418.m02800 expressed protein
          Length = 542

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 80  KRTSTFALAVAGGTFFFER 136
           K+T+TF LA+ GG  + E+
Sbjct: 167 KKTATFRLAIVGGKIYVEK 185


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 128 FERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQF 241
           F++ F+++   IF      +LWKD++   ++ ++N +F
Sbjct: 575 FKKLFDILGDGIFNA--DSELWKDLRKSAQSMMMNPEF 610


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
          EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
          sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 17 LEFFEKIFKMSLWSTLNRTVFKRTST 94
          L FF KI   S++STL  + F  TST
Sbjct: 11 LAFFPKISYASVFSTLKPSFFHSTST 36


>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
           putative / long-chain acyl-CoA synthetase, putative
           similar to acyl-CoA synthetase (MF7P) gi:1617270 from
           Brassica napus
          Length = 666

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 41  KMSLWSTLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGK 187
           K S++  + R + +  +     ++GG FF ++ F++     F N+ KG+
Sbjct: 315 KPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQ 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,881,535
Number of Sequences: 28952
Number of extensions: 72773
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)