Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30751
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.6  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.8  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   8.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.4  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 249 NQRGLRIAGLPSPGCSLLLH 308
           + +G  + GLP+P  S+++H
Sbjct: 241 HHQGQLVVGLPAPTSSIMMH 260


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 228 RNTPLGQNQRGLRIAGLPSPGCS 296
           R   +G +Q   R+  L  PGCS
Sbjct: 387 RQLAVGGSQEESRVLDLSKPGCS 409


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 205 RHLGGLRIACRPRGLVVVAPTTASPASRGG 116
           R L GL+ A  P+G ++     + P   GG
Sbjct: 155 RLLQGLKDAFAPKGYLLTVAVNSIPGEVGG 184


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 160 VVVAPTTASPASRGGG*W 107
           VVV   + SP + GGG W
Sbjct: 20  VVVKTRSNSPEAGGGGFW 37


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 160 VVVAPTTASPASRGGG*W 107
           VVV   + SP + GGG W
Sbjct: 20  VVVKTRSNSPEAGGGGFW 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,529
Number of Sequences: 336
Number of extensions: 2873
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)