Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30751
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   2.9  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   5.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   8.9  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 16  STTNVQTSHETKLMKRQRGESEAFSAEHISPITLPLGTPDWRSSAPRPPA 165
           +T +++  H  K  KR+   S      ++ P++ P  +PD   S+P PP+
Sbjct: 236 ATPDIKEQHAKK-PKRKHTRSTV-PTSNVEPVSQPQPSPDKIVSSPNPPS 283


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 192 PPRWRRLEWSILRNTPLGQNQRGLRI 269
           P    +L +SI RNT  G+N RGL +
Sbjct: 37  PEETEKLLYSIKRNTLGGKNNRGLAV 62


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 426 RRISPKPWPSKCFGSPHMSAWGPAKGA*EDDVQAALHAFYA-RAMSIRVMEGRLSS 262
           RR  P        GSP     GP  G    D+Q  L AF+A R+ S+  +  ++SS
Sbjct: 115 RRSLPTAAGQNNIGSPPTPP-GPFPGGLSTDIQEKLKAFHASRSKSMPEVVNKISS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,438
Number of Sequences: 5004
Number of extensions: 46308
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)