Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30751
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0388 + 3432177-3433154 35 0.060
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 33 0.14
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 30 1.3
11_04_0397 - 17230152-17231453 29 2.3
08_02_0249 - 14770259-14770344,14770434-14770514,14770606-147710... 29 2.3
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 29 3.0
11_06_0444 + 23633129-23633183,23633409-23633446,23633967-236340... 29 3.0
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760... 29 3.0
05_04_0055 + 17536241-17536729,17537297-17537401 29 3.0
01_01_1177 - 9378230-9378301,9378385-9378498,9379641-9379786,938... 29 4.0
05_03_0179 - 9257066-9258946 28 5.2
02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034 28 5.2
07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317 28 6.9
03_01_0605 - 4453409-4453692,4454541-4454594,4454706-4454812,445... 28 6.9
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 28 6.9
01_06_1740 - 39575614-39576981 28 6.9
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 27 9.2
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 27 9.2
07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626... 27 9.2
05_04_0310 + 20114415-20117819 27 9.2
>08_01_0388 + 3432177-3433154
Length = 325
Score = 34.7 bits (76), Expect = 0.060
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +3
Query: 114 PPPRDAGLAVVGATTTSPLGRQAIRSPPRWRRLEWSILRNT----PLGQNQRGLRIA 272
PPPR A A A T G +A+ W E ILR P G+ QR +IA
Sbjct: 144 PPPRHAAAAAAAAATAVSDGGEAVEDAGEWTDQEMDILRRQMVKHPAGEPQRWEKIA 200
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 130 PDWRSSAPRPPALSVGRLSEARLDG 204
P WRSSAP P A+ + RL+++ LDG
Sbjct: 31 PAWRSSAPVPRAVPLSRLTDSFLDG 55
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 99 HLSHHPPPRDAGLAVVGATTTSPL 170
H HHPPP L ++ A+TT+PL
Sbjct: 235 HHHHHPPPPPPELQLLPASTTAPL 258
>11_04_0397 - 17230152-17231453
Length = 433
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 90 CGAHLSHHPPPRDAGLAVVGATTTSPLGRQAIRSPPRW 203
C H +H P PR G A GAT L A+ W
Sbjct: 51 CSLHWAHRPLPRGVGTAAFGATAVLCLAVGAVSLLLSW 88
>08_02_0249 -
14770259-14770344,14770434-14770514,14770606-14771006,
14771358-14771392,14771913-14771950,14772176-14772230
Length = 231
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 539 VTEHRCHNTRQRQVVSYFCDEDT 607
V EH CH + ++VS FCD T
Sbjct: 92 VAEHVCHPEKMERLVSSFCDAQT 114
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 209 PAPSR-RASDSLPTERAGGRGADDRQSGVPRGR 114
P+P R R D R GRG DDR PRGR
Sbjct: 150 PSPHRDRDRDRHAAGRPRGRGDDDRDRDPPRGR 182
>11_06_0444 +
23633129-23633183,23633409-23633446,23633967-23634001,
23634353-23634753,23634845-23634925,23635015-23635100
Length = 231
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 539 VTEHRCHNTRQRQVVSYFCDEDT 607
V EH CH + ++VS FCD T
Sbjct: 92 VAEHVCHPEKMERLVSSFCDVQT 114
>11_02_0036 +
7599646-7599950,7600106-7600145,7600403-7600437,
7600789-7601189,7601281-7601361,7601451-7601536
Length = 315
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 539 VTEHRCHNTRQRQVVSYFCDEDT 607
V EH CH + ++VS FCD T
Sbjct: 176 VPEHVCHPEKMERLVSSFCDAQT 198
>05_04_0055 + 17536241-17536729,17537297-17537401
Length = 197
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 342 EDDVQAALHAFYARAMSIRVMEGRLSSTHAGS 247
EDD Q A+ FYA ++R M G S+ G+
Sbjct: 74 EDDEQRAVERFYALVANVRAMRGMYRSSGDGA 105
>01_01_1177 -
9378230-9378301,9378385-9378498,9379641-9379786,
9380004-9380086,9381178-9381233,9381619-9381822,
9381914-9382159
Length = 306
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 190 LRIACRPRGLVVVAPTTASPAS 125
LR+A RPR L APTTA+ A+
Sbjct: 31 LRLAARPRALSASAPTTAAVAA 52
>05_03_0179 - 9257066-9258946
Length = 626
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 22 TNVQTSHETKLMKRQRGESEAFSAEHISPITLPLGTPDWRSSAPRPP-ALSVGRLSEARL 198
T T + + + ES + EH+ P T+ P S+A PP +L+ + EA +
Sbjct: 156 TKCSTPVPSCAITKSDAESTPTTLEHVFPATMSQSMPSAASAAAAPPVSLTATKEDEADM 215
Query: 199 D 201
D
Sbjct: 216 D 216
>02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034
Length = 178
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 197 RRASDSLPTERAGGRGADDRQSGVPRGR 114
RR+S P + A ADD +S V RGR
Sbjct: 50 RRSSPVKPADEAAAAAADDDESDVKRGR 77
>07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317
Length = 496
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 218 PF*PAPSRRASDSLPTERAGGRGA 147
P P P R + SLP E+ GGRG+
Sbjct: 39 PSRPPPPPRVAKSLPREQPGGRGS 62
>03_01_0605 -
4453409-4453692,4454541-4454594,4454706-4454812,
4454865-4454928,4456996-4457896
Length = 469
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 209 PAPSRRASDSLPTERAGGRGADDRQSGVPRGR 114
PA SRR S + + GG G DD PRGR
Sbjct: 380 PARSRRWSAGVVPQVDGGGGDDDGTGPKPRGR 411
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 55 MKRQRGE---SEAFSAEHISPITLPLGTPDWRSSAPRPPA 165
M+R RG+ S++ + E S IT G+P+W + RPP+
Sbjct: 193 MQRNRGQFTSSKSKAEEATSVITSSEGSPNWGAVEGRPPS 232
>01_06_1740 - 39575614-39576981
Length = 455
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 152 HDHQP-SRSAGYPKPA*MAPVRMVYPTEYPAGSEPAWVEDSRPSITR 289
H P S AG+P P P P P G +PA + D+ SI R
Sbjct: 118 HGRTPWSAPAGHPAPPAAVPEEPQEPRLGPPGLKPAKILDTHKSIER 164
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 127 TPDWRSSAPRPPALSVGRLSEARLDGAG*NGLSYG 231
+P + SS +PP+L+VG LS G G YG
Sbjct: 95 SPAYASSRAQPPSLAVGLLSVLAQGATGSKGGIYG 129
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 197 RRASDSLPTERAGGRGAD 144
RRAS +P +R GGRG D
Sbjct: 21 RRASSPIPRDRYGGRGRD 38
>07_01_0795 -
6257985-6258149,6258276-6258380,6259196-6259328,
6260225-6260289,6260569-6261642,6262328-6262433,
6262872-6263044,6263352-6263765
Length = 744
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 114 PPPRDAGLAVVGATTTSPLGRQAIRSPPR 200
PPPR A SP + +R+PPR
Sbjct: 6 PPPRSPAATPDAAAPASPARTRVVRAPPR 34
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 120 PRDAGLAVVGATTTSPLGRQAIRSPPRWRRLEWSILRNTPLGQNQ-RGLRIAGLPSPG 290
P D ++++G+++ +G+Q + RL+ + + + + N R ++ AGL PG
Sbjct: 102 PNDGKVSLLGSSSIGKIGKQLVGKDESVNRLKAVVEKLSSIRANSGRLMQAAGLTKPG 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,555,572
Number of Sequences: 37544
Number of extensions: 460433
Number of successful extensions: 1750
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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