Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30751
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28422| Best HMM Match : TerC (HMM E-Value=4)                        29   2.3  
SB_45429| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)                     29   3.1  
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)                    29   3.1  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           28   5.4  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           28   5.4  
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.4  

>SB_28422| Best HMM Match : TerC (HMM E-Value=4)
          Length = 465

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 339 DDVQAALHAFYARAMSIRVMEGRLSSTHAGSDPAGYSVG*TIL 211
           D   A +H   A+   + + EG L   H GSDPAG S    +L
Sbjct: 160 DGTTAVVH-IQAKRWLLVLKEGHLQDIHKGSDPAGKSSSPAVL 201


>SB_45429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 281 WKAGYPQPTLVLTQRGIP*DRPF*PAPSRR--ASDSLP 174
           ++A YP+  ++  Q+ +P  R   P PSRR   S+S+P
Sbjct: 53  YRARYPRRAVISPQKSVPPPRSLPPPPSRREEMSNSVP 90


>SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)
          Length = 389

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 281 WKAGYPQPTLVLTQRGIP*DRPF*PAPSRR--ASDSLP 174
           ++A YP+  ++  Q+ +P  R   P PSRR   S+S+P
Sbjct: 53  YRARYPRRAVISPQKSVPPPRSLPPPPSRREEMSNSVP 90


>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
          Length = 273

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 389 KHLEGQGLGDIRLPGPGSTAAGLCVSH 469
           K ++G+ LG IR  GPG  +A + VSH
Sbjct: 84  KAIKGKILGKIRKEGPGMKSAAVSVSH 110


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 114 PPPRDAGLAVVGATTTSPLGRQAIRSPPRWRRLEWSILRNTPL 242
           PPP   G  V G     P G  +  +  +  RL W  ++N+PL
Sbjct: 665 PPPPPPGGGVPGPPKPPPPGNLSTLNKKKMVRLFWQEVKNSPL 707


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 423  RISPKPWPSKCFGSPHMSAWGPAK 352
            R+ P+PW     GS    +WGPA+
Sbjct: 2291 RLCPRPWRYSTAGSWFSPSWGPAR 2314


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 449  AGLCVSHAPRRLLLRDGALAEVEHRLPRLVVTEHRCHNTRQRQVVSYFCD 598
            +G+C+SH    L ++   + + + +   L+VTE    N   R+++SY  D
Sbjct: 1373 SGVCLSHQDTNLFVKVSHIGDPQDKSRELIVTE-VSPNRLGRRILSYVVD 1421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,755
Number of Sequences: 59808
Number of extensions: 436492
Number of successful extensions: 1451
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)