Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30751
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain...    28   4.4  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    28   4.4  
At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    28   5.8  

>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein hypothetical proteins -
           Arabidopsis thaliana contains Pfam profile PF00564: PB1
           domain
          Length = 476

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 211 NRRHLGGLRIACRPRGLVVVAPTTASPASRGG 116
           N R+ G LR+ CR  G +V  P T SP   GG
Sbjct: 25  NERN-GKLRVMCRYGGSIVSPPQTKSPRYVGG 55


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 389 KHLEGQGLGDIRLPGPGSTAAGLCVSHAPRRLLLRDGALAE 511
           ++LE  GL     PGPG++  G+C +     L +R G + +
Sbjct: 225 EYLEEYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRD 265


>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 232 FRRIDHSNRRHLGGLRIACRPRGLV-VVAPTTASPAS 125
           F  I HS+  H+GGL +    RGL  +  PT   PAS
Sbjct: 49  FLFISHSHMDHIGGLPMYVATRGLYKMKPPTIIVPAS 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,010
Number of Sequences: 28952
Number of extensions: 292920
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)