Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30750
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...   130   2e-31
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    54   2e-08
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    29   0.81 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   10.0 

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score =  130 bits (313), Expect = 2e-31
 Identities = 75/191 (39%), Positives = 108/191 (56%), Gaps = 8/191 (4%)
 Frame = +1

Query: 124 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXXX 300
           RV+ASP+AR+LAE K++ L   +G+G  G +   D+                        
Sbjct: 185 RVFASPLARKLAEEKDLDLSQIRGSGPNGRIIKVDIENFKPVVAPKPSNEAAAKATTPAA 244

Query: 301 XXT-------FVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLA 459
                     + DLPLS MR+ IA RL  +K   PHY ++V+VN+EK + +R  +N   A
Sbjct: 245 SAADAAAPGDYEDLPLSNMRKIIASRLAESKNMNPHYYVTVSVNMEKIIRLRAALN---A 301

Query: 460 SEKADVKVSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXL 639
                 K+SVND +IKA  AA ++VP VN+ WM  FIRQ+ NVD+S+AVATP+GLITP +
Sbjct: 302 MADGRYKLSVNDLVIKATTAALRQVPEVNAAWMGDFIRQYKNVDISMAVATPSGLITPVI 361

Query: 640 HNADSRGIIDL 672
            N  + G+ ++
Sbjct: 362 RNTHALGLAEI 372


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
 Frame = +1

Query: 325 LSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSVNDFII 504
           ++ MR  IA+RL  ++            ++   +A+RK   + +  E   VK+    F  
Sbjct: 225 MNRMRLRIAERLKESQNRAASLTTFNECDMSAVVALRKKYKDEILKETG-VKIGFMSFFS 283

Query: 505 KAVAAACKRVPTVNSHWM-----ESFI-RQFSNVDVSVAVATPTGLITPXLHNADSRGII 666
           KA   A K++P +N         ++ + R F   D+S+AVATP GL+TP + NA+S  ++
Sbjct: 284 KACTQAMKQIPAINGSIEGEGKGDTLVYRDFC--DLSIAVATPKGLVTPVIRNAESMSLL 341

Query: 667 DL 672
           ++
Sbjct: 342 EI 343


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = +1

Query: 379 IPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSVNDFIIKAVAAACKRVPTVNSHWM 558
           +P+Y   + V  +    + + V +R+ +EK D+   +NDF+  +  A    +     +  
Sbjct: 113 LPYYTSKIFVYEDADTRLERCVLQRVKAEKGDLTKVLNDFVTLSKPAYDSSIHPTREN-A 171

Query: 559 ESFIRQFSNVDVSV 600
           +  + Q  N+D ++
Sbjct: 172 DIILPQKENIDTAL 185


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 481 VSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDV 594
           +S+ +FI+KA+A+  + +  V +  +  FI+  +N+D+
Sbjct: 574 LSLREFIMKALASTSRCLRVVAAKVLPIFIKGPNNLDI 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,069
Number of Sequences: 5004
Number of extensions: 29372
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)