Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30750
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 122 3e-28
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 121 6e-28
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 118 3e-27
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 93 1e-19
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 48 5e-06
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 48 7e-06
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 45 6e-05
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 41 8e-04
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 37 0.017
05_04_0374 - 20736615-20737037,20737148-20737639,20738145-207384... 29 2.6
12_01_0678 - 5785021-5785484,5785514-5785568 28 5.9
09_02_0467 - 9602816-9602881,9603016-9603097,9603184-9603291,960... 28 7.8
02_04_0170 + 20576149-20576889 28 7.8
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 122 bits (293), Expect = 3e-28
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Frame = +1
Query: 121 GRVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXX 297
GR+++SP+AR+LAE N+ L GTG G + D+
Sbjct: 1758 GRIFSSPLARKLAEDNNVPLSSVMGTGPDGRILKADIEDYLASVAKGGKREALAAPGL-- 1815
Query: 298 XXXTFVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADV 477
++ D+P + +R+ A RL ++KQ+IPHY L+V V+ + +R +N L
Sbjct: 1816 ---SYTDVPNTQIRKVTANRLLSSKQTIPHYYLTVDARVDNLIKLRGELNP-LQESSGGK 1871
Query: 478 KVSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADSR 657
K+S+ND +IKA A A ++VP NS WM FIRQ+ NV+++VAV T GL P + +AD +
Sbjct: 1872 KISINDLVIKAAALALRKVPQCNSSWMSDFIRQYHNVNINVAVQTEHGLFVPVIRDADKK 1931
Query: 658 GI 663
G+
Sbjct: 1932 GL 1933
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 121 bits (291), Expect = 6e-28
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Frame = +1
Query: 124 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXXX 300
R ++SP+AR+LAE N+ L +GTG G + D+
Sbjct: 213 RTFSSPIARKLAEDNNVPLSSIKGTGPDGRILKADIEDYLASVAKGAKKETAAAPGLG-- 270
Query: 301 XXTFVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVK 480
+VDLP + +R+ A RL +KQ+IPHY L+V V+K + +R +N L K
Sbjct: 271 ---YVDLPNTQIRKVTANRLLHSKQTIPHYYLTVDTRVDKLIKLRSELNP-LQDTSGGKK 326
Query: 481 VSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADSRG 660
+S+ND +IKA A A + VP NS WM FIRQ+ NV+++VAV T GL P + +AD +G
Sbjct: 327 ISINDLVIKAAALALRNVPECNSSWMNDFIRQYHNVNINVAVQTEDGLFVPVIRDADKKG 386
Query: 661 I 663
+
Sbjct: 387 L 387
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 118 bits (285), Expect = 3e-27
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 1/181 (0%)
Frame = +1
Query: 124 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXXX 300
R+++SP+AR+LAE N+ L +GTG G + D+
Sbjct: 256 RIFSSPLARKLAEDNNVPLSSVKGTGPDGRILKADIEDYLAKGCRKEALAAPGL------ 309
Query: 301 XXTFVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVK 480
++ D+P + +R+ A RL ++KQ+IPHY L+V V+ + +R +N L K
Sbjct: 310 --SYTDVPNAQIRKVTANRLLSSKQTIPHYYLTVDTRVDNLIKLRGELNP-LQESSGGKK 366
Query: 481 VSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADSRG 660
+S+ND +IKA A A ++VP NS WM FIRQ+ NV+++VAV T GL P + +AD +G
Sbjct: 367 ISINDLVIKAAALALRKVPQCNSSWMNDFIRQYHNVNINVAVQTEHGLFVPVIRDADKKG 426
Query: 661 I 663
+
Sbjct: 427 L 427
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 93.5 bits (222), Expect = 1e-19
Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Frame = +1
Query: 310 FVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSV 489
+ D+P S +R+ IAKRL +KQ+ PH LS V ++ LA R NE E+ VKVSV
Sbjct: 348 YEDIPNSQIRKVIAKRLLESKQTTPHLYLSQDVILDPLLAFR---NE--LKEQHGVKVSV 402
Query: 490 NDFIIKAVAAACKRVPTVNSHWM--ESFIRQFSNVDVSVAVATPTGLITPXLHNADSRGI 663
ND +IKAVA A + VP N++W + ++ +VD+S+AVAT GL+TP + NAD + I
Sbjct: 403 NDIVIKAVALALRNVPEANAYWNNDKEQAQKCVSVDISIAVATEKGLMTPIIRNADQKTI 462
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/118 (26%), Positives = 55/118 (46%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSVNDF 498
+P+ +R+ IA RL ++ + V++ + +R + + K VK+ +
Sbjct: 214 VPMPRLRKRIANRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDEFVT-KHGVKLGLMSC 272
Query: 499 IIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADSRGIIDL 672
+KA A + P VN+ I VD+SVAV T GL+ P + +AD+ D+
Sbjct: 273 FVKAAVTALQNQPIVNAVIDGDDIIYRDYVDISVAVGTSKGLVVPVIRDADNMNFADI 330
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 48.0 bits (109), Expect = 7e-06
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLAS--EKADVKVSVN 492
+P+ +R+ IA RL K S + + +T N + KL+++ EK VK+ +
Sbjct: 186 VPMPRLRKRIANRL---KDSQNTFAMLITFNEVDMTNLMKLLSDYKDQFVEKHGVKLGLM 242
Query: 493 DFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADSRGIIDL 672
+KA +A + P VN+ I +D+SVAV T GL+ +H+ D+ D+
Sbjct: 243 SCFVKAAVSALQNQPIVNAVIDGDDIIYREYIDISVAVGTSKGLVVLVIHDIDAMNFADI 302
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 44.8 bits (101), Expect = 6e-05
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 2/185 (1%)
Frame = +1
Query: 124 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXXX 300
RV ASP AR+LA+ N+ L G+G G + + D+
Sbjct: 188 RVVASPYARKLAKDLNVDLNSITGSGPGGRIVAKDVEAAAAAPKKAAPVAAARPDVPLGS 247
Query: 301 XXTFVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVK 480
+P + M+ ++K + + ++P +++ T + A+ K + +
Sbjct: 248 T-----VPFTTMQGAVSKNMVESL-AVPTFRVGYTFTTDALDALYKKIKPK--------G 293
Query: 481 VSVNDFIIKAVAAACKRVPTVNSHWMESFIRQF-SNVDVSVAVATPTGLITPXLHNADSR 657
V+++ + KA A A + P +NS + + S+++++VAVA GLITP L +AD
Sbjct: 294 VTMSALLAKATAMALVQHPVINSSCRDGKSFTYNSSINIAVAVAIDGGLITPVLPDADKL 353
Query: 658 GIIDL 672
I L
Sbjct: 354 DIYSL 358
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSVNDF 498
+P +GM+ ++K + + ++P +++ + +K + + V + V++
Sbjct: 257 VPFTGMQAAVSKNMVESL-AVPAFRVGYPIVTDKLDELYEKVKSK--------GVTMTVL 307
Query: 499 IIKAVAAACKRVPTVNSHWMESFIRQFS-NVDVSVAVATPTGLITPXLHNADSRGI 663
+ KA A A + P VN+ + ++ N++++VAVA GLITP L +AD I
Sbjct: 308 LAKAAAMALAQHPVVNASCRDGKSFTYNTNINIAVAVAIDGGLITPVLEDADKLDI 363
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 36.7 bits (81), Expect = 0.017
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSVNDF 498
+P + M+ +++ + + S+P +++ V +K A+ + V + V+
Sbjct: 272 VPFTTMQAAVSRNMMESL-SVPTFRVGYAVCTDKLDALCEKVKSK--------GVTKTLL 322
Query: 499 IIKAVAAACKRVPTVNSHWMESFIRQF-SNVDVSVAVATPTGLITPXLHNAD 651
++KA A A + P VN+ + + S+++++VAVA GL+TP L + D
Sbjct: 323 LVKAAAMALTQHPVVNASCRDGKSFSYNSSINIAVAVAIEGGLLTPVLEDVD 374
>05_04_0374 -
20736615-20737037,20737148-20737639,20738145-20738422,
20738576-20738732
Length = 449
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 509 PWRLPASACLQSTHIGW 559
PW LPA +CLQS + W
Sbjct: 48 PWDLPAQSCLQSRDLEW 64
>12_01_0678 - 5785021-5785484,5785514-5785568
Length = 172
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3
Query: 405 GDTELVVRDALFSGRQPLGDGLPHAGQRQVHK 310
G ELVV DA+ GRQ L L HAG R+ K
Sbjct: 65 GGAELVVLDAVIRGRQ-LHASLLHAGGRRGEK 95
>09_02_0467 -
9602816-9602881,9603016-9603097,9603184-9603291,
9603803-9603900,9603986-9604084,9604202-9604339,
9604748-9604799,9604876-9604989,9605054-9605142,
9605674-9605707,9605900-9606019,9606138-9606220
Length = 360
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 405 GDTELVVR-DALFSGRQPLGDGLPH 334
G L VR DA+F+G++P+ G+PH
Sbjct: 128 GKDLLFVRPDAVFNGQKPISGGIPH 152
>02_04_0170 + 20576149-20576889
Length = 246
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 417 LDVDGDTELVVRDALFSGRQPLGDG 343
++ DGD ++V+ DA +G++ +GDG
Sbjct: 34 VESDGDDDVVIVDACNNGKRKVGDG 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,571
Number of Sequences: 37544
Number of extensions: 249816
Number of successful extensions: 616
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -