Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30750
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)             133   1e-31
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                82   5e-16
SB_31440| Best HMM Match : 2-oxoacid_dh (HMM E-Value=3.5e-14)          37   0.013

>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  133 bits (322), Expect = 1e-31
 Identities = 62/118 (52%), Positives = 87/118 (73%)
 Frame = +1

Query: 310 FVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSV 489
           + D+PLS MR+ IAKRL  +KQ+IPHY LSV V +++ + +RK +NE+    K   K+S+
Sbjct: 204 YEDIPLSNMRQVIAKRLLQSKQTIPHYYLSVDVKMDQLIEIRKQLNEQ---GKGSYKLSI 260

Query: 490 NDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADSRGI 663
           NDFI+K+ A AC++VP  NS WM  FIR++ NVDVSVAV+T  GLITP + +AD +G+
Sbjct: 261 NDFIVKSCALACRQVPEANSSWMGDFIRRYENVDVSVAVSTDNGLITPIVFDADKKGL 318


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 43/114 (37%), Positives = 64/114 (56%)
 Frame = +1

Query: 307 TFVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVS 486
           TF D+P + MR  IAKRL  +K +IPH   S    ++  L ++  + ER       V VS
Sbjct: 162 TFTDVPNTEMRREIAKRLLKSKTTIPHVYASTDCVMDNLLQLKSHLKER------GVTVS 215

Query: 487 VNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNA 648
           VND ++K  A   ++VP +N+ W    I    ++D++V VAT  G+ITP + NA
Sbjct: 216 VNDLLVKVAAVCLRKVPEMNAVWNGKEIEYLKDIDLAVDVATDVGIITPVIRNA 269


>SB_31440| Best HMM Match : 2-oxoacid_dh (HMM E-Value=3.5e-14)
          Length = 107

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 586 VDVSVAVATPTGLITPXLHNADSRGIIDL 672
           VD+SVAV+TP GL+ P L N +S    D+
Sbjct: 13  VDISVAVSTPKGLVVPVLRNVESMNFADI 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,115
Number of Sequences: 59808
Number of extensions: 253771
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)