Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30750
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 142 2e-34
Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical pr... 111 4e-25
AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical ... 55 4e-08
U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated ... 28 7.0
U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated ... 28 7.0
U88308-15|AAK68218.1| 548|Caenorhabditis elegans Uncoordinated ... 28 7.0
U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated ... 28 7.0
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 28 7.0
U88308-12|AAK68216.1| 467|Caenorhabditis elegans Uncoordinated ... 28 7.0
U41024-1|AAA82345.2| 679|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF144261-1|AAD37369.1| 456|Caenorhabditis elegans AP180-like ad... 28 7.0
AF144260-1|AAD37368.1| 535|Caenorhabditis elegans AP180-like ad... 28 7.0
AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like ad... 28 7.0
AF144258-1|AAD37366.1| 548|Caenorhabditis elegans AP180-like ad... 28 7.0
AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like ad... 28 7.0
>Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical
protein F23B12.5 protein.
Length = 507
Score = 142 bits (345), Expect = 2e-34
Identities = 80/184 (43%), Positives = 111/184 (60%), Gaps = 3/184 (1%)
Frame = +1
Query: 121 GRVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXX 297
GRV ASP A++LA + L G G+G G + + DL
Sbjct: 218 GRVSASPFAKKLAAENGLDLSGVSGSGPGGRILASDLSQAPAKGATSTTTQAVSGQD--- 274
Query: 298 XXXTFVDLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKAD- 474
+ D+PLS MR+TIAKRLT +K +IPHY L+ + ++ L +R+ +N LA +
Sbjct: 275 ----YTDIPLSNMRKTIAKRLTESKSTIPHYYLTSEIQLDTLLQVREKLNGLLAKGTSGQ 330
Query: 475 -VKVSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNAD 651
K+S+NDFIIKA A AC+RVP NS+WM+SFIR+ +VDVSVAV+TP GLITP + NA
Sbjct: 331 ATKISINDFIIKASALACQRVPEANSYWMDSFIRENHHVDVSVAVSTPAGLITPIIFNAH 390
Query: 652 SRGI 663
++G+
Sbjct: 391 AKGL 394
>Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical
protein C30H6.7 protein.
Length = 337
Score = 111 bits (267), Expect = 4e-25
Identities = 60/117 (51%), Positives = 78/117 (66%)
Frame = +1
Query: 316 DLPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSVND 495
D+PLS +R TIAKRLTA+KQ IPH V V ++ LA+R+ + +K+ VS+ND
Sbjct: 102 DIPLSNIRATIAKRLTASKQQIPHEYQGVDVRIDDILALRQKL------KKSGTAVSLND 155
Query: 496 FIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADSRGII 666
FIIKA A A + VPTVN W I +VD+SVAVATPTGLITP + N+D G++
Sbjct: 156 FIIKAAALALRSVPTVNVRWTPEGI-GLGSVDISVAVATPTGLITPIVENSDILGVL 211
>AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical
protein W02F12.5 protein.
Length = 463
Score = 55.2 bits (127), Expect = 4e-08
Identities = 36/107 (33%), Positives = 55/107 (51%)
Frame = +1
Query: 334 MRETIAKRLTAAKQSIPHYQLSVTVNVEKTLAMRKLVNERLASEKADVKVSVNDFIIKAV 513
MR IA+RL A+ + +++ + MRK + + K VK+ + ++A
Sbjct: 242 MRMRIAQRLKDAQNTYAMLTTFNEIDMSSLIEMRKTYQKDFVA-KHGVKLGMMSPFVRAA 300
Query: 514 AAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPXLHNADS 654
A A + P VN+ E+ I VD+SVAVATP GL+ P L N +S
Sbjct: 301 AYALQESPVVNAVLDENEIVYRHFVDISVAVATPKGLVVPVLRNVES 347
>U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated
protein 11, isoform c protein.
Length = 657
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated
protein 11, isoform a protein.
Length = 586
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>U88308-15|AAK68218.1| 548|Caenorhabditis elegans Uncoordinated
protein 11, isoform h protein.
Length = 548
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated
protein 11, isoform b protein.
Length = 546
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>U88308-12|AAK68216.1| 467|Caenorhabditis elegans Uncoordinated
protein 11, isoform e protein.
Length = 467
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>U41024-1|AAA82345.2| 679|Caenorhabditis elegans Hypothetical
protein T14G11.3 protein.
Length = 679
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 391 QLSVTVNVEKTLAMRKLVNERLASEKADVKVS 486
Q+ +++ K L ++L +ER+ASEK +++S
Sbjct: 353 QVREELHISKALEEQRLADERIASEKLSIEMS 384
>AF144261-1|AAD37369.1| 456|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 456
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>AF144260-1|AAD37368.1| 535|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 535
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 546
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>AF144258-1|AAD37366.1| 548|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 548
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
>AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 586
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 319 LPLSGMRETIAKRLTAAKQSIPHYQLSVTV---NVEKTLAMRK 438
+P + +TI+ RLTAAK S+ QL T+ E+ +A +K
Sbjct: 12 MPFTTGGQTISDRLTAAKHSLAGSQLGKTICKATTEEVMAPKK 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,690,354
Number of Sequences: 27780
Number of extensions: 177619
Number of successful extensions: 411
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -