Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30748
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)    161   3e-40
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)           57   1e-08
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 31   0.72 
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               29   2.2  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)                     28   5.1  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   5.1  
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)                     28   6.7  
SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)                    27   8.8  

>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
          Length = 210

 Score =  161 bits (392), Expect = 3e-40
 Identities = 73/148 (49%), Positives = 98/148 (66%)
 Frame = -1

Query: 542 DNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFV 363
           +N+E  L +K+  +T      E+K  V +LY+FLGLV    LYL+FG+GA+LI   +GF 
Sbjct: 13  ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71

Query: 362 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 183
           YPAY S+KA+ES QKDDDT+WL YWVV+A F+IVE+FSD ++ WFPLY+L K IF+ WC 
Sbjct: 72  YPAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCM 131

Query: 182 LPTEYNGSLVXXXXXXXXXX*KHHGRID 99
            P  +NGS             +H  +ID
Sbjct: 132 APVSWNGSDTLYQKVIKPFVLRHQSQID 159


>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
          Length = 110

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/57 (43%), Positives = 35/57 (61%)
 Frame = -1

Query: 458 RLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW 288
           R+ + L +V FT LY+  G+ A   CN I  V+P Y S+ A+E+P  +  TKWL YW
Sbjct: 55  RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFPVYASISAIENPDYEIGTKWLMYW 110


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 364 TKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSA 483
           T+P+  H  S+P+P + + PVN T P       TP   +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 479 RLVQNISSMACFCRSDFVLCCLYTLVIWMPL 571
           R ++NI +  C   S F LCC + L  W+ L
Sbjct: 100 RTLENIRARRCMRTSAFGLCCRFILAHWVKL 130


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 286 TQYVSHFVSSSFCGDSRAFIDMYAGYTK 369
           T +V HFV + FCG++R+ +  +  + +
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFRSFNR 801


>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +1

Query: 205 HFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELH 384
           +F+++   N  T  +EKYST   + Y+T+    + + +    S    + Y+  TK  E +
Sbjct: 208 NFSTKATENYSTKATEKYSTKASENYSTKATEKYSTKAAENYSTKATEKYS--TKATEKY 265

Query: 385 INSAPKP-NTKYKPVNATKPKKMYN 456
              A +  +TK     +TK  K Y+
Sbjct: 266 STKATENFSTKATENYSTKATKNYS 290


>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
          Length = 483

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 353 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 201
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 123  VVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVLHDRKTGVHHPICKP 302
            +V    +VV H+ PVV  R     H+  +   V  +P       ++H   T V HP  +P
Sbjct: 1381 IVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHSHDTYVSHPFFEP 1437

Query: 303  F 305
            F
Sbjct: 1438 F 1438


>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 353 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 201
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170


>SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)
          Length = 273

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +1

Query: 190 QITKMHFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTK 369
           Q+ +       N N+   K  KYS+  +Q Y   ++   VSS F      F   Y   T+
Sbjct: 137 QMVEFVITGNPNENKTHGKWPKYSSENRQVYQAAFIESGVSSDFLAQKADFWTRYLPQTE 196


>SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 584 LKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAE-QKVGVNRLYIFLG 438
           LKD+T ASK  E  +  EQS+  K +   K+  L + Q      +Y F G
Sbjct: 43  LKDKTKASKATEKPEIFEQSVMGKVQTNIKFHNLEDRQDYRDESVYTFCG 92


>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 578 DRTMASKLQEYKDNIEQSLNDKSKP 504
           DRT   K++E   N+++S +D SKP
Sbjct: 89  DRTKKDKVEERPPNLQKSFSDFSKP 113


>SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)
          Length = 388

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 575 RTMASKLQEYKDNIEQSLNDKSKPWTKYFELAEQK 471
           R  +SKLQ+YK    Q+L+     W +Y +   +K
Sbjct: 190 RDKSSKLQQYKYEKTQALDSNFPKWKEYIQQEAKK 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,594,808
Number of Sequences: 59808
Number of extensions: 423412
Number of successful extensions: 1555
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)