Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30747
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    63   2e-12
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.87 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.1  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 63.3 bits (147), Expect = 2e-12
 Identities = 53/230 (23%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
 Frame = +1

Query: 7   DKIVIVTGGANGIGAFSVEVFIENQAKHVAIL-DIDTISGFKLEKHLNTKYGDGKVKFYK 183
           D++ +VTG  +GIG   +E  +    K + I   +D +    L + L +K   GK+   +
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMK--TLVEELKSK--PGKLVPLQ 62

Query: 184 CDVSIDDQLFGAFNKALDSHGYIDVVVNNAAVSLENSLER-----IRRLVDINVTALVMS 348
           CD+S  + +         + G ID+++NNA ++++ +L+       +++ DIN+  L   
Sbjct: 63  CDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCM 122

Query: 349 TLKAIEIMRVDKTGKGGTIINISSIAALK--QFCPSVFVYCGTKSAVLQFSNCIGKQEYF 522
             + +++M+  K    G I+NI+  + L       +   Y  +K A+   ++C+  +   
Sbjct: 123 IQEVLKLMK-KKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQ 181

Query: 523 SKTGVRVITVCYGPTDTDLVP--LMINIDDSINPEIRSNIDAQKLQTAES 666
            ++ ++VI++     +TD+    L  N   ++ P+  SN     LQT ++
Sbjct: 182 CESNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLFALQTPDN 231


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 508 KQEYFSKTGVR-VITVCYGPTDTDLVPLMINIDDSINPEIRSNIDAQKLQ 654
           K  +F   GV  +I  CYG  +  +    +     I+   +  ++ QKLQ
Sbjct: 250 KTTFFESCGVADLIATCYGGRNRKICEAFVKTGKKISELEKEMLNGQKLQ 299


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 130 LEKHLNTKYGDGKVKFYKCDVSIDDQLFGAFNKALDSHGYI 252
           LE HL   +G    K  KC  S  ++     N  L SH  +
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNK--SMLNSHLKSHSNV 42


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +2

Query: 47  VRLVLKYLLKIRPSMLPSWTSTQFPDSNWK 136
           ++ V+K+L++ +P +  S  +   PD  ++
Sbjct: 87  IKKVIKFLVENKPELWDSLANKYDPDKKYR 116


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +2

Query: 47  VRLVLKYLLKIRPSMLPSWTSTQFPDSNWK 136
           ++ V+K+L++ +P +  S  +   PD  ++
Sbjct: 87  IKKVIKFLVENKPELWDSLANKYDPDKKYR 116


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 571 TDLVPLMINIDDSINPEIRSNIDAQK 648
           TD+V L++  DD +  +   +I+  K
Sbjct: 217 TDIVVLVVAADDGVKEQTLQSIEMAK 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,312
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)