Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30743
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    23   1.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   3.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   6.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.9  

>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 481 SPHPITGLTWTSLTKTVNWRRPMKRRR 561
           SPH I G+T      T + + P+KR+R
Sbjct: 42  SPHVIGGITSGGPIPTKSSKYPIKRKR 68


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 LVLRMQNRISALQSELSRTTKRAA 215
           LVL ++NR   L  +L++ TK  A
Sbjct: 544 LVLMLKNRFVTLNVQLTKLTKNCA 567


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 164 VLHAQHQPGVRHRHGPV 114
           ++H   QPGV+  HGP+
Sbjct: 143 LVHDILQPGVKGLHGPI 159


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 167 PVLHAQHQPGVRHRHGPVVV 108
           P LH+ H P + H+  P ++
Sbjct: 87  PQLHSHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 167 PVLHAQHQPGVRHRHGPVVV 108
           P LH+ H P + H+  P ++
Sbjct: 87  PQLHSHHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 167 PVLHAQHQPGVRHRHGPVVV 108
           P LH+ H P + H+  P ++
Sbjct: 87  PQLHSHHGPPIHHQIRPPIL 106


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 167 PVLHAQHQPGVRHRHGPVVV 108
           P LH+ H P + H+  P ++
Sbjct: 87  PQLHSHHGPPIHHQIRPPIL 106


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 157 MRNTSPASATGTVPLLWPA 101
           +  + P   T + P+LWPA
Sbjct: 174 LSKSEPEKKTESQPMLWPA 192


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 647 LYFGLSGRYVLRIEFLFGCQLFL*LSIY 564
           +Y+  S   +  I  LF C L + L IY
Sbjct: 212 IYYFYSAFIIFTIHLLFYCVLIILLCIY 239


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 66  CPRTAPTRSRSHPRLRSP 13
           CP+   T + +HPR   P
Sbjct: 172 CPKVNETVAATHPRYADP 189


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 142 PASATGTVPLLWPADQFTASRA 77
           P      +PLL P  Q TAS A
Sbjct: 189 PTQGASPLPLLVPIPQRTASTA 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,253
Number of Sequences: 336
Number of extensions: 2201
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)