Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30743
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 31 0.11
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.34
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.45
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 29 0.59
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 29 0.78
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 1.0
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 28 1.0
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 28 1.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 1.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 2.4
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 27 2.4
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 7.3
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 7.3
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 7.3
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 7.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 7.3
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 9.6
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 25 9.6
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 9.6
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 31.5 bits (68), Expect = 0.11
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Frame = +3
Query: 63 DTSRPALEAVNWSAGHNNGTVPVADAGLVLRMQNRISALQSE-LSRTTKRAADLEERLLN 239
+TSR L+ ++ NN P A+A L Q R + E L + L LL
Sbjct: 1050 ETSRKELDQFLRNSKVNNFD-PNAEAQRHLSYQARYRLKKQERLDEHKEEQEQLVTELLG 1108
Query: 240 RLSSPPSNPNVDRF-XXXXXXXXXXXXXXXXDRLRAAGDSTLVS--KEVIDQLGVIQKEL 410
L PPS PN + F D+ R GDST + E +LG ++L
Sbjct: 1109 YLPEPPSKPNANPFLLYQKMQWHVCRALADEDKRRLTGDSTAKATINETRAKLGKTWRQL 1168
Query: 411 D 413
D
Sbjct: 1169 D 1169
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.34
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 438 LKSVLTNQTVNLKSLASSNYGSDVDI-----INEDGELASAYEAQKGINRQLQEELTAEK 602
LK LTN+ L S + N +I N + +++ +A++ I ++ E+L +EK
Sbjct: 1435 LKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQ-ITKEQFEQLKSEK 1493
Query: 603 EFYSKHISSAKAEIERLR 656
E K ++ +K E+E L+
Sbjct: 1494 ERTEKELADSKNELEHLQ 1511
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.5 bits (63), Expect = 0.45
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 399 QKELDRRRDECVQLKSVLTNQTVNL--KSLASSNYGSDVDIINEDGELASAYEAQKGINR 572
++E D+ + E V K + V + KSL S+ S++ + NE+ ++AS + +
Sbjct: 386 EEESDKVKGESVYPKPESESYDVEMNGKSLEDSDSLSELYLTNEEKKMASIIKDSVNVQI 445
Query: 573 QLQEELTAEKEFYSKHISSAKAEIE 647
+L E + ++ +HI E++
Sbjct: 446 KLIESKLSHFDYLDQHIRLKSQELD 470
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 29.1 bits (62), Expect = 0.59
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +3
Query: 381 DQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELASAYEAQK 560
+ G+ ++EL RR +L L N + + + S+ ++ + ++G A E
Sbjct: 67 EHFGLDEEELKSRRRFVSELDIELNNIQLKMGAAPSTPVSTEPYTV-DNGASAGLSEEDH 125
Query: 561 GINRQLQEELTAEKE 605
+NRQ QE+L +++
Sbjct: 126 AVNRQYQEQLYQQQD 140
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 28.7 bits (61), Expect = 0.78
Identities = 28/108 (25%), Positives = 45/108 (41%)
Frame = +3
Query: 177 LQSELSRTTKRAADLEERLLNRLSSPPSNPNVDRFXXXXXXXXXXXXXXXXDRLRAAGDS 356
L+S LS+ ++L + L+ S+ PS P++ + + D+
Sbjct: 317 LRSSLSKLLS-TSNLNNKPLSLSSTAPSMPSIGSVELGNMIPKETQPPSMRNDWKDYLDN 375
Query: 357 TLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYG 500
SKE++DQ G +QK C + + NQ L S SNYG
Sbjct: 376 N--SKEILDQFGFLQKRPSHDTPLCPE--DIKLNQKQTL-SFYESNYG 418
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 28.3 bits (60), Expect = 1.0
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +3
Query: 354 STLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINE-DG 530
S L KE + + L+ EC +VL+ Q+ N + S+Y +IN+ D
Sbjct: 292 SFLALKEAVSMTSEQLRVLEHLLSECSHEINVLSQQSKNFNGVFESSY---QPLINDLDH 348
Query: 531 ELASAYEAQKGINRQLQE-ELTAEKEFYSK 617
+++ +K IN E L+ EK+ +K
Sbjct: 349 QISVMQNDEKRINNAKTELSLSLEKKLEAK 378
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 504 DVDIINEDGELASAYEAQKGINRQLQEELT-AEKEFYSKHISS 629
DVD ++ED L +AY +Q G R L E + F ++H S
Sbjct: 251 DVDYVDEDLNLINAYLSQFGKKRSLNELCALLSRRFSNRHTFS 293
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 116 VVVARGPVHGLQGGPAGVHGPHRPV 42
+VVA+GP GL+ P GV G ++ V
Sbjct: 758 LVVAKGPNKGLKSRPKGVKGKYKMV 782
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/99 (24%), Positives = 49/99 (49%)
Frame = +3
Query: 339 RAAGDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDII 518
+A DST + +++QL + + E+D R E + K V+ + L SN + ++
Sbjct: 638 KAKEDSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVI---ALKESELVKSN--DNKLLL 692
Query: 519 NEDGELASAYEAQKGINRQLQEELTAEKEFYSKHISSAK 635
NE ++ S + + ++ E +T KE + ++S+ K
Sbjct: 693 NE--QIESLNDQLSQLKTEM-ESVTTSKESLADYLSNLK 728
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 156 MQNRISALQSELSRTTKRAADLEERLLNRLSSPPSNPNVD 275
+Q+++ L +R +RA LEER+ + + NVD
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVD 356
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 414 RRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGE 533
++ +E +Q+K L +Q S +S N G D ++DGE
Sbjct: 175 KKEEEDIQMKEPLDSQDTGAVSASSVNEGFRADQKSKDGE 214
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 486 SSNYGSDVDIINEDGELASAYEAQKGINRQLQEELTAEKEFYSKHISSA 632
S+++ SD+ +NE+ +L SA E K ++ L E T S ++ A
Sbjct: 7 STSFPSDIPAVNEESKL-SAEETFKSLSEILAENSTLPVGISSIRVTGA 54
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 336 LRAAGDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTV 467
L + S + V++ G QKE+ RD C+ S+ N+ V
Sbjct: 553 LASTPSSEFTRRIVLESKGNSQKEIIASRDYCIGTASLCLNEDV 596
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 396 IQKELDRRRDECVQLKSVLTNQTVNLK 476
+++ L ++R+EC +L+S +TN LK
Sbjct: 25 MEELLSKQREECKELQSKITNLRKQLK 51
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 VLRMQNRISALQSELSRTTKRAADLEERLLNRLSS--PPSNPNV 272
V +Q+R+ A SE + + +LEE+LLN +++ PPS P +
Sbjct: 150 VASLQDRLGAQPSEKVFSLQ---ELEEQLLNSMTAPKPPSQPAI 190
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +3
Query: 348 GDSTLVSKEVIDQLGVIQKE---LDRRRDECVQLKSVLTNQTVNL-----KSLASSNY 497
GD+ L + V +Q+G+++K LD + + L+ T+ T+NL KSL +S Y
Sbjct: 709 GDNPLTAVYVAEQVGIVEKPTLVLDIKHENEKILEWKSTDDTINLPMNPHKSLEASLY 766
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 129 VADAGLVLRMQNRISALQSELSRTTKRAADLEE 227
V +AG + ++R +QS+L ++ ADL++
Sbjct: 346 VTEAGFIAIKEDRDYVIQSDLMSAARKVADLKK 378
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 501 SDVDIINEDGELASAYEAQKGINRQLQEELTAEKEFYSKHIS 626
+ + +E E ASA G+ QL E + +FY K +S
Sbjct: 400 NSTEAFSEINEYASALSKNYGLESQLVELQSLLTQFYQKFLS 441
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.6
Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Frame = +3
Query: 330 DRLRAAGDSTLVSKEVIDQLGVIQKELDRRRDECV-QLKSV---------LTNQTVNLKS 479
D+L A ++E+ DQ+ + +K+L+ R+++ + QL + NQ +
Sbjct: 303 DKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAK 362
Query: 480 LASSNYGSDVDIINED-GELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEIERLR 656
N + +I ++ + E + + ++++ +E ISS E E+L+
Sbjct: 363 QRMDNIREEYKVITQERNKKIQETEKKNAMIEMTEQKIAGMREELESQISSITMEFEKLK 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,068
Number of Sequences: 5004
Number of extensions: 36328
Number of successful extensions: 170
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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