Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30743
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32883| Best HMM Match : K-box (HMM E-Value=0.032) 33 0.15
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 33 0.27
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 30 1.4
SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89) 30 1.9
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.3
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 29 3.3
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.4
SB_13363| Best HMM Match : COG2 (HMM E-Value=0.081) 29 4.4
SB_42922| Best HMM Match : Tcp11 (HMM E-Value=0) 28 5.8
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 28 7.7
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 28 7.7
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 28 7.7
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 28 7.7
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 28 7.7
>SB_32883| Best HMM Match : K-box (HMM E-Value=0.032)
Length = 192
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 351 DSTLVSKEVIDQ-LGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINED 527
D ++ V Q L K+L ++ E + K +L + V LK + S+ S+V+IINE
Sbjct: 39 DYSIAQSNVRQQSLNCEAKKLHQQAHE-LDRKCILAS--VELKGMESNINQSEVEIINEI 95
Query: 528 GELASAYEAQKGINRQLQEELTAEKE 605
L Y+A + N L+E+L A+++
Sbjct: 96 DRLKKKYKAVQKSNAILREKLKAKEK 121
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +3
Query: 399 QKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDI---INEDGELASAYEAQKGIN 569
+K L R+ D+ L + +L+SL SS D+ + + E E Q +
Sbjct: 787 EKNLARQSDDLSLQVQTLDAEKRSLQSLVSSQEKQVADLSVKLEKSSERCRLMEQQLQME 846
Query: 570 RQLQEELTAEKEFYSKHISSAKAEIERLR 656
+ ELT + ++ S+ SSAK E + L+
Sbjct: 847 QSKSTELTTKFQYSSQSSSSAKQEADALK 875
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 168 ISALQSELSRTTKRAADLEERLLNRLSSPPS 260
I ALQ ELS+ R ++EERLL+ L+ S
Sbjct: 1672 IEALQGELSKAEVRLKEVEERLLSALAEAKS 1702
>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 438 LKSVLTNQTVNLKSLASSNYGSDVDIINEDGELASAYEAQKGINRQLQEELTAEKEFYSK 617
+ + L Q L +L S D N +G+ +E Q+ + + ++ELTA K
Sbjct: 286 IATALAKQEAILANLHKELNASKDD--NSEGQDELLWEVQRKVTQLKRKELTATGAELRK 343
Query: 618 HISSAKAEIERL 653
+ + ++EIERL
Sbjct: 344 QLQAERSEIERL 355
>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
Length = 589
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 393 VIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELASAYEAQKGINR 572
+I ++L+RR+ E +L+ +L N + K S N S I NE+ L S + +
Sbjct: 83 LITEDLNRRKKENTKLRELLNNAQEDAKKPVSENMESFKRIENENEHLRSLLKKSEDEAI 142
Query: 573 QLQEE 587
++++E
Sbjct: 143 EIKKE 147
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 393 VIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELASAYEAQKGINR 572
+I ++L+RR+ E +L+ +L N + K S N S I NE+ L S + +
Sbjct: 3189 LITEDLNRRKKENTKLRELLNNAQEDAKKPVSENMESFKRIENENEHLRSLLKKSEDEAI 3248
Query: 573 QLQEE 587
++++E
Sbjct: 3249 EIKKE 3253
>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 199 PPSAPPTWRRGCSIASPLRLP 261
PPS PP WR+ S+ S LRLP
Sbjct: 526 PPSTPPMWRKHNSLES-LRLP 545
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 399 QKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELASAYEAQKGINRQL 578
+KE+D+ D+ + + K A D + +DG Y+ + + ++
Sbjct: 622 EKEVDKEGDKESEKSEKDGEKGDEKKDDAKKQEDEDAEEGADDGYDEYYYDEDEPLQCEV 681
Query: 579 -QEELTAEKEFYSKHISSAKAEIERL 653
+EE T+E + KH+SS K E++RL
Sbjct: 682 CKEEFTSETKL-RKHLSSHKVEVKRL 706
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 360 LVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVN---LKSLASSNYGSDVDIINEDG 530
LV+ +DQ V + R+ ++ V K+ LT T+N LK L S++ +II++D
Sbjct: 1320 LVTSNTVDQKIVERAASKRKLEKMVNSKAKLTGTTLNALQLKELLESSHHD--EIISKDE 1377
Query: 531 ELASAYEAQKGINR 572
+ S E + ++R
Sbjct: 1378 VILSQSELESLLDR 1391
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 136 TPGWCCACRTGSRRCRASCPGPPSAPPTW 222
TP C C C A GPP PPTW
Sbjct: 948 TPSPDCDCSEAMNVCPAGAGGPP--PPTW 974
>SB_13363| Best HMM Match : COG2 (HMM E-Value=0.081)
Length = 411
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +3
Query: 336 LRAAGDSTLVS-KEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVD 512
+R D+T+VS +E +DQ + R++ C+Q +T ++ L + D
Sbjct: 82 IRTELDNTIVSIEEKLDQRSQL-----RQKKVCMQHLLNITKSLEKIERLLKGSLADDTA 136
Query: 513 IINEDGELASAYEAQKGINRQLQEELTAEKEF 608
INED +S+ + K N +L+ +++ F
Sbjct: 137 DINEDSSSSSSAISLK-FNEELRRDISWGSSF 167
>SB_42922| Best HMM Match : Tcp11 (HMM E-Value=0)
Length = 392
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 357 TLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDG-E 533
TLVS ++ +G + K+LD+ +LK VL V L+ L + S + I++
Sbjct: 295 TLVSSVILVTMGTVSKQLDKDAAYIARLKEVL---FVLLEGLGEGDISSSMQNISDQVIS 351
Query: 534 LASAYEAQKGINRQLQEELTA 596
S ++G+ + +E+ +A
Sbjct: 352 ETSKVLCERGLAQLTEEQKSA 372
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +3
Query: 348 GDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINED 527
GD L D+ ++ EL +++ V+LKS LT+ + + S + +
Sbjct: 2517 GDDKLKPANDCDEDNKLKNELMLAKEQLVRLKSELTSSNIQTTDIGSQLSCLRDESNKLE 2576
Query: 528 GELASAYEAQKGINRQLQE-ELTAEKEFYSKHISSAKAEIERLR 656
EL S A + ++ L E + SS ++E+ +L+
Sbjct: 2577 AELTSMKRAPQADDKSTATIHLEVELSDWKDQASSLQSEVAQLK 2620
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Frame = +3
Query: 396 IQKELDRRRDEC----VQLKSV-LTNQTV--NLKSLASSNYGSDVDIINEDGELASAYEA 554
++KEL + ++EC ++ +S+ + N T+ +LKS + + + + E +S
Sbjct: 1267 LEKELFKTKEECSDWIMKYESIQMHNDTLVESLKSCENKIFAQEEAMQTLKKEKSSMKTD 1326
Query: 555 QKGINRQLQEELTAEKEFYSKHISSAKAEIERLR 656
N++L + AE E Y K ++ + IERL+
Sbjct: 1327 LDNTNKKLSKS-KAELENYKKRVADLQVIIERLK 1359
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 143 PGVRHRHGPVVVARGPVHGLQGGPAGVHGPHRPVAVV 33
PG + HG +GP +G Q GP G++GP P+ V
Sbjct: 330 PGYQGNHGNPAGPQGP-NG-QPGPPGINGPPGPLGDV 364
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 143 PGVRHRHGPVVVARGPVHGLQGGPAGVHGPHRPVAVV 33
PG + HG +GP +G Q GP G++GP P+ V
Sbjct: 415 PGYQGNHGNPAGPQGP-NG-QPGPPGINGPPGPLGDV 449
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 143 PGVRHRHGPVVVARGPVHGLQGGPAGVHGPHRPVAVV 33
PG + HG +GP +G Q GP G++GP P+ V
Sbjct: 500 PGYQGNHGNPAGPQGP-NG-QPGPPGINGPPGPLGDV 534
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = -2
Query: 158 HAQHQPGVRHRHGPVVVARGPVHGLQGGPAGV-HGPH 51
H H R RHGP HG P HGPH
Sbjct: 30 HGPHTDPTRTRHGPHTDTTRTPHGHDTDPTRTRHGPH 66
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 131 HRHGPVVVARGPVHGLQGGPAGVHGPHR 48
H GP+ ++ GP GLQG P PHR
Sbjct: 1012 HHGGPIPISDGP-GGLQGPPLIPGSPHR 1038
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 131 HRHGPVVVARGPVHGLQGGPAGVHGPHR 48
H GP+ ++ GP GLQG P PHR
Sbjct: 145 HHGGPIPISDGP-GGLQGPPLIPGSPHR 171
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = +3
Query: 405 ELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELASAYEAQKGINRQLQE 584
E+++ R E + L T + + + N G + ++ E A YE+Q + +
Sbjct: 1122 EIEKLRTERATFEHQLEGMTSQITRIKAENEGH-IKLVLESN--AEGYESQIKEKDLVIQ 1178
Query: 585 ELTAEKEFYSKHISSAKAEIERLR 656
+L E+E Y I S + +I +R
Sbjct: 1179 QLRDEREQYENQIESLRQQIVVIR 1202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,440,256
Number of Sequences: 59808
Number of extensions: 323977
Number of successful extensions: 1228
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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