Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30743
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 2.2
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 29 2.2
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81487-7|CAB04001.2| 495|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 3.8
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 3.8
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.8
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 29 3.8
AL021470-4|CAA16294.2| 495|Caenorhabditis elegans Hypothetical ... 29 3.8
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 29 3.8
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 29 3.8
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 28 5.1
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 28 5.1
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL032637-4|CAA21619.2| 534|Caenorhabditis elegans Hypothetical ... 28 5.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 5.1
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81045-2|CAB02814.2| 298|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 28 6.7
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 6.7
AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen prot... 28 6.7
AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical ... 27 8.9
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 24 9.6
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 24 9.6
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
protein F43C1.1 protein.
Length = 1036
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 330 DRLRAAGDSTLVSKEVIDQLGVIQKELDRRRD-----ECVQLKSVLTNQTVNLKSLASSN 494
+RL + DS L S E+++ L + L R D C+Q+ +NQ V++ +SN
Sbjct: 544 NRLNSFDDSALSSLELLEDLNLSSNRLTRLADCLALLPCLQVLRAHSNQLVHVPEFRASN 603
Query: 495 YGSDVDIINEDGELAS 542
+D+ + + L +
Sbjct: 604 QLHTIDVSSNNISLGT 619
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 127 RWRTPGWCCACRTGSRRCRASCPGPPSAP 213
R+ PG C C + S+ C A PGPP P
Sbjct: 77 RFVYPGMC-NCDSNSQGCPAGAPGPPGNP 104
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +3
Query: 399 QKELDRRRDECV-QLKSVL--TNQ-TVNLKSLASSNYGSDVDIIN----EDGELASAYEA 554
QK D +D+ QL ++ T+Q T L+ G D +I+N + E++ +
Sbjct: 552 QKIEDEEQDDITEQLAKIVEDTSQLTRTLEEYRERITGKDAEILNLRKQLEKEISHTEDR 611
Query: 555 QKGINRQLQEELTAEKEFYSKHISSAKAEIERLR 656
+ ++ Q+EL A KE +++ + +AEI++ +
Sbjct: 612 NRLLHENTQKELEAHKETHTETVRVLEAEIDQFK 645
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 139 PGWCCACRTGSRRCRASCPGPPSAP 213
P WC C RC PGPP P
Sbjct: 91 PSWC-QCEPAKPRCPRGPPGPPGRP 114
>Z81487-7|CAB04001.2| 495|Caenorhabditis elegans Hypothetical
protein Y17D7A.4 protein.
Length = 495
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/74 (21%), Positives = 35/74 (47%)
Frame = +3
Query: 360 LVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELA 539
L+ ++++ ++ + KELD E + L ++ N+ +L N D+D +E L
Sbjct: 138 LMQEKILMEVEELFKELDAHGGEEIDLPKLIDRSVGNVINLTLFNKRFDMDKRDEFAHLK 197
Query: 540 SAYEAQKGINRQLQ 581
S + + + Q +
Sbjct: 198 SLIDGMRNVTSQFR 211
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 528 GELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEI 644
GE + + + G N Q ++EL+ +K + ISS KAE+
Sbjct: 330 GEERARIQKKIGKNNQERQELSQKKTEFENRISSLKAEV 368
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 528 GELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEI 644
GE + + + G N Q ++EL+ +K + ISS KAE+
Sbjct: 316 GEERARIQKKIGKNNQERQELSQKKTEFENRISSLKAEV 354
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 528 GELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEI 644
GE + + + G N Q ++EL+ +K + ISS KAE+
Sbjct: 316 GEERARIQKKIGKNNQERQELSQKKTEFENRISSLKAEV 354
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 151 CACRTGSRRCRASCPGPPSAP 213
C C T C A PGPP AP
Sbjct: 81 CNCGTQPSNCPAGPPGPPGAP 101
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 127 RWRTPGWCCACRTGSRRCRASCPGPPSAP 213
R+ PG C C + S+ C A PGPP P
Sbjct: 77 RFVYPGMC-NCDSNSQGCPAGPPGPPGLP 104
>AL021470-4|CAA16294.2| 495|Caenorhabditis elegans Hypothetical
protein Y17D7A.4 protein.
Length = 495
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/74 (21%), Positives = 35/74 (47%)
Frame = +3
Query: 360 LVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELA 539
L+ ++++ ++ + KELD E + L ++ N+ +L N D+D +E L
Sbjct: 138 LMQEKILMEVEELFKELDAHGGEEIDLPKLIDRSVGNVINLTLFNKRFDMDKRDEFAHLK 197
Query: 540 SAYEAQKGINRQLQ 581
S + + + Q +
Sbjct: 198 SLIDGMRNVTSQFR 211
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 420 RDECVQLKSVLTNQTVNLKSLA 485
R++C+QL VL+N+TV +K+ A
Sbjct: 441 REQCLQLNPVLSNKTVPIKATA 462
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 420 RDECVQLKSVLTNQTVNLKSLA 485
R++C+QL VL+N+TV +K+ A
Sbjct: 438 REQCLQLNPVLSNKTVPIKATA 459
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 145 WCCACRTGSRRCRASCPGPPSAPPTWRRGC 234
W C+C G + R P + PP W GC
Sbjct: 125 WICSCPPGWQGRRCETPDTVTTPPVW-DGC 153
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical protein
C18C4.5b protein.
Length = 1046
Score = 28.3 bits (60), Expect = 5.1
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 2/167 (1%)
Frame = +3
Query: 156 MQNRISALQSELSRTTKRAADLEERLLNRLSSPPSNPNVDRFXXXXXXXXXXXXXXXXDR 335
M + Q E+ + T +A L+ + + + N+ +
Sbjct: 629 MMKDLHEAQDEIEKLTNQAGQLKSKNETLTTELEDSQNLCERLKAQYEKADKKYEETKVQ 688
Query: 336 LRAAGD--STLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDV 509
LR A D L + +++ V K D +++ ++++ +L N L+ L S
Sbjct: 689 LREAEDLADRLQAAQILSG-NVESKFSDMQKESKIEMERILDNHNKELEKLREELKKSHT 747
Query: 510 DIINEDGELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEIER 650
E L S E Q+ QLQ++L EKE S ++ +IE+
Sbjct: 748 ----EHTSLESVLEEQQNELAQLQDQLREEKE-QSSNLLVLNQKIEK 789
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical protein
C18C4.5a protein.
Length = 1022
Score = 28.3 bits (60), Expect = 5.1
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 2/167 (1%)
Frame = +3
Query: 156 MQNRISALQSELSRTTKRAADLEERLLNRLSSPPSNPNVDRFXXXXXXXXXXXXXXXXDR 335
M + Q E+ + T +A L+ + + + N+ +
Sbjct: 629 MMKDLHEAQDEIEKLTNQAGQLKSKNETLTTELEDSQNLCERLKAQYEKADKKYEETKVQ 688
Query: 336 LRAAGD--STLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDV 509
LR A D L + +++ V K D +++ ++++ +L N L+ L S
Sbjct: 689 LREAEDLADRLQAAQILSG-NVESKFSDMQKESKIEMERILDNHNKELEKLREELKKSHT 747
Query: 510 DIINEDGELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEIER 650
E L S E Q+ QLQ++L EKE S ++ +IE+
Sbjct: 748 ----EHTSLESVLEEQQNELAQLQDQLREEKE-QSSNLLVLNQKIEK 789
>AL032637-4|CAA21619.2| 534|Caenorhabditis elegans Hypothetical
protein Y43F8C.4 protein.
Length = 534
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +3
Query: 42 YGSVRSVDTSRPALEAVNWSAGHNNGTVPVAD---AGLVLRMQNRISALQSELSRTTKRA 212
+G+ T P + +A T P D AG +LR++ + + EL T ++
Sbjct: 117 FGTAPRAATVTPGVTVAAPAASQPTATAPPPDNFDAGRILRLEAELERVNRELEDTKRKK 176
Query: 213 ADLEERLLN 239
+ EE L N
Sbjct: 177 REDEEDLEN 185
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 151 CACRTGSRRCRASCPGPPSAP 213
C C SR C A PGPP P
Sbjct: 80 CNCGAQSRGCPAGPPGPPGQP 100
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 151 CACRTGSRRCRASCPGPPSAP 213
C C S C A PGPP AP
Sbjct: 79 CNCGAQSSGCPAGPPGPPGAP 99
>Z81045-2|CAB02814.2| 298|Caenorhabditis elegans Hypothetical
protein C36F7.2 protein.
Length = 298
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 498 GSDVDIINEDGELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKA 638
G+++++I+ DG Y+ G +++ +AEK FY K I KA
Sbjct: 191 GANIELIDPDGRGIIDYDGWSG-----EDQRSAEKHFYGKIILRPKA 232
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 151 CACRTGSRRCRASCPGPPSAP 213
C C S C A PGPP AP
Sbjct: 79 CNCGAQSSGCPAGPPGPPGAP 99
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 151 CACRTGSRRCRASCPGPPSAP 213
C C SR C A PGPP P
Sbjct: 80 CNCGEQSRGCPAGPPGPPGQP 100
>AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen protein
55 protein.
Length = 208
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 151 CACRTGSRRCRASCPGPPSAP 213
C C + S+ C A PGPP P
Sbjct: 93 CNCESQSQGCPAGPPGPPGQP 113
>AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical
protein Y48G1A.1 protein.
Length = 901
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 426 ECVQLKSVLTNQTVNLKSLASSNYGSDVDIINED--GELASAYEAQKGINRQLQEELTAE 599
+ V+LKS+LT++ + L G D D I ++ G LA+ R+L +
Sbjct: 3 QIVELKSLLTSEPIKAIELFDRLVGQDADTITQEACGTLANYIRHSSVFKRRLLFTELQK 62
Query: 600 KEFYSK 617
F++K
Sbjct: 63 CSFFAK 68
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 24.2 bits (50), Expect(2) = 9.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 519 NEDGELASAYEAQKGINRQLQEELTAEKE 605
NE+ L A + KG N + + ELT KE
Sbjct: 394 NENASLRVANDGFKGRNEEQEAELTVLKE 422
Score = 21.4 bits (43), Expect(2) = 9.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 348 GDSTLVSKEVIDQLGVIQKELDR 416
GDS + E I++LG + LDR
Sbjct: 361 GDSAEANAESIERLGETVETLDR 383
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 24.2 bits (50), Expect(2) = 9.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 519 NEDGELASAYEAQKGINRQLQEELTAEKE 605
NE+ L A + KG N + + ELT KE
Sbjct: 394 NENASLRVANDGFKGRNEEQEAELTVLKE 422
Score = 21.4 bits (43), Expect(2) = 9.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 348 GDSTLVSKEVIDQLGVIQKELDR 416
GDS + E I++LG + LDR
Sbjct: 361 GDSAEANAESIERLGETVETLDR 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,607
Number of Sequences: 27780
Number of extensions: 227165
Number of successful extensions: 1122
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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