Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30743
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 33 0.17
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 32 0.39
At3g47870.1 68416.m05218 LOB domain family protein / lateral org... 32 0.39
At3g12020.1 68416.m01490 kinesin motor protein-related similar t... 31 0.89
At5g49880.1 68418.m06177 mitotic checkpoint family protein simil... 30 1.2
At5g64560.2 68418.m08114 magnesium transporter CorA-like family ... 29 2.7
At5g64560.1 68418.m08113 magnesium transporter CorA-like family ... 29 2.7
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 29 2.7
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 28 4.8
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 28 4.8
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 28 4.8
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK... 28 6.3
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 28 6.3
At4g30830.1 68417.m04373 expressed protein weak similarity to M ... 27 8.3
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b... 27 8.3
At1g68910.1 68414.m07886 expressed protein similar to Myosin hea... 27 8.3
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo... 27 8.3
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 33.1 bits (72), Expect = 0.17
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Frame = +3
Query: 369 KEVIDQLGVIQKELDRRRDECVQLKSVL---TNQT----VNLKSLASSNYGSDVDIINED 527
+E + Q G+++KEL+ R++ +L+ + NQT + LK SS + + +N+D
Sbjct: 197 QEELSQNGIVRKELEVARNKIKELQRQIQLDANQTKGQLLLLKQHVSSLQMKEEEAMNKD 256
Query: 528 GELASAYEAQKGINRQLQE------ELTAEKEFYSKHISSAKAEIERL 653
E+ +A + + Q+ E EL EK S + SA+A I L
Sbjct: 257 TEVERKLKAVQDLEVQVMELKRKNRELQHEKRELSIKLDSAEARIATL 304
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 31.9 bits (69), Expect = 0.39
Identities = 23/98 (23%), Positives = 50/98 (51%)
Frame = +3
Query: 360 LVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELA 539
L KE++ + +QKEL +RR++C +L+ L +T + L + N ++I ++ E+
Sbjct: 92 LQEKELL--INDLQKELTQRREDCTRLQEELEEKTKTVDVLIAEN----LEIRSQLEEMT 145
Query: 540 SAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEIERL 653
S + + N+ L + +K ++ ++ A E +
Sbjct: 146 SRVQKAETENKMLIDRWMLQKMQDAERLNEANDLYEEM 183
>At3g47870.1 68416.m05218 LOB domain family protein / lateral organ
boundaries domain family protein (LBD27) identical to
SP|Q9STS6 Putative LOB domain protein 27 {Arabidopsis
thaliana}; similar to lateral organ boundaries (LOB)
domain-containing proteins from Arabidopsis thaliana
Length = 328
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 136 TPGWCCACRTGSRRCRASCPGPPSAP 213
T G C AC+ RRC A CP P P
Sbjct: 33 TSGACAACKYQRRRCAADCPLAPYFP 58
>At3g12020.1 68416.m01490 kinesin motor protein-related similar to
putative kinesin heavy chain GB:AAD23684 GI:4567271 from
[Arabidopsis thaliana]
Length = 1030
Score = 30.7 bits (66), Expect = 0.89
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 393 VIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDG-ELASAYEAQKGIN 569
+IQ+ L+ + EC L+ + N L G+ + + +D EL+ + E + N
Sbjct: 805 IIQQTLNEKTCECEVLQEEVANLKQQLSEALELAQGTKIKELKQDAKELSESKEQLELRN 864
Query: 570 RQLQEELTAEKEFYSKHISSAKA 638
R+L AE+ Y+K ++SA A
Sbjct: 865 RKL-----AEESSYAKGLASAAA 882
>At5g49880.1 68418.m06177 mitotic checkpoint family protein similar
to mitotic checkpoint protein isoform MAD1a [Homo
sapiens] GI:4580767; contains Pfam profile PF05557:
Mitotic checkpoint protein
Length = 726
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = +3
Query: 360 LVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELA 539
+V +V+D L +K+++ + + L + T K + + ELA
Sbjct: 65 MVKADVLDALSTAEKQVEESKTKLQTLNANFTEADAERKHFRDK-------FLYSEQELA 117
Query: 540 SAYEAQKGINRQLQEELTAEKEFYSKHISS 629
+A +K + QL E+ +E Y+K + S
Sbjct: 118 AAKAREKMLQEQLLMEINNSQERYTKELQS 147
>At5g64560.2 68418.m08114 magnesium transporter CorA-like family
protein (MRS2-2) weak similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 378
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 357 TLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTV--NLKSLASSNYGSDVDIINEDG 530
T + + + D I +LD R++ +QL+ VL++ TV ++ SL + +G ++ DG
Sbjct: 300 TTLREYIDDTEDYINIQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGMNIPYTWNDG 359
>At5g64560.1 68418.m08113 magnesium transporter CorA-like family
protein (MRS2-2) weak similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 394
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 357 TLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTV--NLKSLASSNYGSDVDIINEDG 530
T + + + D I +LD R++ +QL+ VL++ TV ++ SL + +G ++ DG
Sbjct: 300 TTLREYIDDTEDYINIQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGMNIPYTWNDG 359
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
strong similarity to dynamin-like protein 6 (ADL6)
[Arabidopsis thaliana] GI:6651399; contains Pfam
profiles PF01031: Dynamin central region, PF00350:
Dynamin family, PF02212: Dynamin GTPase effector domain,
PF00169: PH domain; identical to cDNA dynamin-like
protein ADL3, GI:4803835
Length = 920
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 144 LVLRMQNRISALQSELSRTTKRAADLEERLLNRLSSP-PSNPN 269
LV R R + R++K+ D E+ LLNR +SP P P+
Sbjct: 498 LVQRRMERQRREEELKGRSSKKGQDAEQSLLNRATSPQPDGPS 540
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 372 EVIDQLGVIQKELDRRRDECVQLKS---VLTNQTVNL-KSLASSNYGSDVDIINED 527
E + ++ Q L + +EC+QL S L +TV L K LAS SD+ + +D
Sbjct: 146 EALQEISTTQHLLKLKSEECIQLNSQCVKLQERTVALAKELASLKLVSDLSLEEDD 201
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/90 (27%), Positives = 41/90 (45%)
Frame = +3
Query: 363 VSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGELAS 542
+SKE+ ++ +KEL+ R ECV L L N K S+ ++I EL S
Sbjct: 1041 LSKEMSEE----KKELESCRLECVTLADRLRCSEENAKQDKESSLEKSLEIDRLGDELRS 1096
Query: 543 AYEAQKGINRQLQEELTAEKEFYSKHISSA 632
A +++Q QE L ++ + + A
Sbjct: 1097 A----DAVSKQSQEVLKSDIDILKSEVQHA 1122
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 354 STLVSKEVID--QLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINED 527
ST+ S+E++D Q+ + D D C LKS + + KS Y SD + D
Sbjct: 342 STVSSRELLDDTQVTEVTCSSDGTNDSCSSLKSSSEVNSTSSKSREDDCYSSDSGVSETD 401
Query: 528 GELASA 545
+ +S+
Sbjct: 402 TDGSSS 407
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 474 KSLASSNYGSDVDIINEDGELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKA 638
KS ++ G + GE+ Y +KG++ +L E +T + S ISS A
Sbjct: 436 KSSSNDLGGHETVATKSVGEVEEEYVRKKGVSFELDENVTTSFDVESSKISSLSA 490
>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 505
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -2
Query: 155 AQHQP-GVRH--RHGPVVVARGPVHGLQGGPAGVHGPHR 48
A H P G H + P V GP H G P G GP+R
Sbjct: 389 APHWPAGPNHPTNNAPPQVPAGPSHNFYGKPRGPPGPNR 427
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +3
Query: 333 RLRAAGDSTLVSKEVIDQL----GVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYG 500
R+ + S+ S+ +ID L GVI KE+ + + + LK NQ ++ L +
Sbjct: 1704 RISSPPRSSGFSRGMIDTLKKSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTARE 1763
Query: 501 SDVDIINEDGELASAYEAQKGINRQLQE 584
+ + + +A E K + L+E
Sbjct: 1764 ASDLAVKHSSKHKAATEVMKSVAEHLRE 1791
>At4g30830.1 68417.m04373 expressed protein weak similarity to M
protein type 1 [Streptococcus pyogenes] GI:311758;
contains Pfam profile PF04576: Protein of unknown
function, DUF593
Length = 363
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 522 EDGELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEIERLR 656
E +L A +K + +LQEEL AE+E + A + I RL+
Sbjct: 14 ETNDLRIALYERKEVIERLQEELNAEREASETSANEAMSMILRLQ 58
>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
boundaries domain protein 11 (LBD11) identical to
SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
Length = 229
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 148 CCACRTGSRRCRASCPGPPSAPPT 219
C AC+ RRC C P PPT
Sbjct: 53 CAACKILRRRCADKCVLAPYFPPT 76
>At1g68910.1 68414.m07886 expressed protein similar to Myosin heavy
chain, nonmuscle type B (Cellular myosin heavy chain,
type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)
(Swiss-Prot:Q27991) [Bos taurus]; contains 1
transmembrane domain
Length = 627
Score = 27.5 bits (58), Expect = 8.3
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +3
Query: 357 TLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKS---LASSNYGSDVDIINED 527
T +SKE++ +L ++Q L+ +LKS L + TV L++ L G+ I+E+
Sbjct: 248 TGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGT----ISEN 303
Query: 528 GELASAYEAQKGINRQLQEELTAEKEFYSKHISSAKAEI 644
E+ S + + +++L + K ++++K EI
Sbjct: 304 SEIVSEVLTLREYVKSAEQKL-KNTDLELKSVNASKQEI 341
>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
boundaries domain protein 1 (LBD1) identical to
SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
Length = 190
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 148 CCACRTGSRRCRASCPGPPSAPPT 219
C AC+ RRC C P PPT
Sbjct: 34 CAACKILRRRCAERCVLAPYFPPT 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,838,030
Number of Sequences: 28952
Number of extensions: 209603
Number of successful extensions: 889
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -