Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30740
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    30   0.40 
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    29   0.70 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   2.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   3.7  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   6.5  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 198 TLPSQAPSAQVQSVIQP-NQQSVIQTASNIQSVQIPKGNV 314
           T  SQ  SA V  +  P N Q++++  S  Q +Q+P+ NV
Sbjct: 599 TPTSQTESASVPQIANPPNSQNLVKEKSPQQYIQVPQSNV 638


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 231 QSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPS-SVIHTTQGTLQTLQIKPEPNTLVN 407
           +S+I+  +Q V Q     Q VQ    N    S+   + +  T    QT ++KP PNT + 
Sbjct: 247 KSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSPNTTIR 306

Query: 408 T 410
           T
Sbjct: 307 T 307


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +3

Query: 189 VQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 368
           V LT P +  S    SV+      V++ A +   ++ P GN    +   +    T  T +
Sbjct: 105 VSLTRPLKKSSTTNLSVLG---NLVLKVAPS--KIRAPAGNHSSTTANRTTSTPTTTTAR 159

Query: 369 TLQIKPEPNTLVNTQGQSCSDES 437
           T +  P P    NT  QS S+ +
Sbjct: 160 TTRTTPRPTATTNTSNQSTSNST 182


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +3

Query: 342  IHTTQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILND 521
            + TT+  L+ +   P+  T+ + Q ++ +        E+ KR Y  +   + +  K +N+
Sbjct: 1385 VKTTEPVLKNI---PQRKTIFDLQQRNANQALY----ENLKRDYDRLNLEKHNLEKQVNE 1437

Query: 522  LGGAEIAVIPAG 557
            L GAE++  P G
Sbjct: 1438 LKGAEVSPQPTG 1449


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 270 TASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSG 449
           T S I + Q+     ++  +   + + TQG  +  +I  + +T++N QG+  ++     G
Sbjct: 156 TESKISNSQLEYQQRLINERQGEIENLTQGINELNEIFRDLSTIINEQGELVTNIEYNVG 215

Query: 450 DESPKRK 470
           + S   K
Sbjct: 216 NTSTNTK 222


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 229 CSLLFNLINNQ*YKQHPISNLYRYQREML 315
           CSL  N      Y QHP+ N Y  + E++
Sbjct: 522 CSLPENFRRTTLYLQHPVFNRYHSETELM 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,715
Number of Sequences: 5004
Number of extensions: 48859
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)