Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30740
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 36 0.045
11_06_0328 - 22395911-22396480 33 0.24
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 29 2.9
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 29 2.9
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 29 5.2
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 28 9.0
06_01_0761 + 5688177-5688968,5689662-5689733,5690330-5690359,569... 28 9.0
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420... 28 9.0
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 351 TQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILN 518
T GT L K + + ++ + CS SCGSG E R +TR+ ++ LN
Sbjct: 174 THGTKTPLNPKTQRRNAIESKDK-CSKSSCGSGSEKSNETLRIAVTRKYGFQNFLN 228
>11_06_0328 - 22395911-22396480
Length = 189
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 333 SSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREML 485
+ + TT G +T + E T G CS E+CG GDE + ++M+
Sbjct: 25 AGAVITTTGESETTTVA-EAAAAETTTGGKCSGEACGGGDEQKQPSAKKMM 74
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 414 GQSCSDESCGSGDESPKRKYREMLTRRPSYRK 509
G+S D+SCG GD++ +K R+ L R + RK
Sbjct: 1042 GESSDDDSCG-GDKAKPKKGRKPLGNREAVRK 1072
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 192 QLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 368
Q P A SAQ+ + SV QTA +SVQ + +++ V+KP T T Q
Sbjct: 321 QSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVHMVSVAKPPVSTQPTTSTNQ 379
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 387 EPNTLVNTQGQSCSDESCGSGDESP 461
EP TQG C E+C SG+ SP
Sbjct: 600 EPANENATQGTKCVPEACSSGENSP 624
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 627 QYAANQDGQFYVPGPILEDQTRKRELRLMKNREAARE 737
+Y N DG ++P P EDQ + + L+ ++A++E
Sbjct: 293 RYQKNDDGTIFMPNP--EDQRVYKAIELVAEQQASQE 327
>06_01_0761 +
5688177-5688968,5689662-5689733,5690330-5690359,
5690598-5690780
Length = 358
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 666 GPILEDQTRKRELRLMKNREAARECR 743
GP +E +R+ R++KNRE+A R
Sbjct: 235 GPTVEKVVERRQRRMIKNRESAARSR 260
>04_04_1375 +
33040329-33040854,33041611-33041838,33041984-33042081,
33042406-33042450,33042678-33042846,33042917-33043026,
33043983-33044051,33044085-33044158,33044738-33044804,
33044876-33044988,33045148-33045237,33046030-33046144,
33046230-33046388
Length = 620
Score = 27.9 bits (59), Expect = 9.0
Identities = 27/84 (32%), Positives = 32/84 (38%)
Frame = +3
Query: 390 PNTLVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILNDLGGAEIAVIPAGTIQT 569
P T G SC S S DE YRE LTR PS ++ E A+ P T T
Sbjct: 168 PMTARKFSGVSCPI-SLDSDDELDDTVYRESLTRTPS------NMAKPEHAIQPCTTSCT 220
Query: 570 DSGLHTLAVSXXXXXXXIVQYAAN 641
D +T + V Y N
Sbjct: 221 DKVENTKSTDKKDYSKSNVGYQTN 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,753,292
Number of Sequences: 37544
Number of extensions: 337774
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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