Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30740
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-06
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 35 0.080
SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088) 31 0.99
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 29 4.0
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.2
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 48.8 bits (111), Expect = 5e-06
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +3
Query: 225 QVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIK-PEPNTL 401
QV SVIQPNQQSVIQTA S IH Q T Q++ + N
Sbjct: 40 QVSSVIQPNQQSVIQTAQ-------------------SPIHQLQPQSLTAQLQLAQQNVH 80
Query: 402 VNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
+ G+ + + ++S KR R++L+RRPSYRKI ND+ G++
Sbjct: 81 IPDTGEETTID-----EDSKKR--RDILSRRPSYRKIFNDISGSD 118
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +3
Query: 639 NQDGQFYVPGPILEDQTRKRELRLMKNREAARECR 743
NQ G I E+ TRKRE+RLMKNREAA+ECR
Sbjct: 223 NQPGIAPSNQQIAEEATRKREMRLMKNREAAKECR 257
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 34.7 bits (76), Expect = 0.080
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = +3
Query: 201 LPSQAPS-AQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQ 377
+P+Q + +++ ++Q S+ +TA+ I + + + + + + + +
Sbjct: 313 MPTQPDTPGKLEHLLQSTTTSMARTANPIMQSPLEQKRAWISTTHAYEVSLCLPSEEKYP 372
Query: 378 IKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYR 506
+ P+ + Q CSD SGD +PKRK R T +Y+
Sbjct: 373 SELSPSAKLTHNTQDCSDMDSDSGDSAPKRKKRRNRTTFTAYQ 415
>SB_2716| Best HMM Match : PD40 (HMM E-Value=0.00088)
Length = 248
Score = 31.1 bits (67), Expect = 0.99
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +3
Query: 213 APSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSS-VIHTTQGTLQTLQIKPE 389
+PS + + V P+ + ++ ++S + V +P G +I+ S S ++++ G + + P
Sbjct: 79 SPSGE-KIVYSPSGEKIVYSSSGEKIVYLPSGEIIVYSPSSEKIVYSPSG--EKIFYSPS 135
Query: 390 PNTLVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILNDLGGAEIAVIPAG 557
+ + S SG++ E++ PS +KI+ G EI P+G
Sbjct: 136 GEKIFYSPSGEKIVYS-PSGEKIIYSPSGEIIVYSPSGKKIVYSPSGEEIVYSPSG 190
>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 207 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKP 386
+Q+P+AQ+ + P QS S + I +GN P++ + TTQ L
Sbjct: 608 TQSPTAQMSTTQSPTAQSPTAQMSTTDAGDIIRGNT--TQLPTAQMSTTQSPTTQLPTTQ 665
Query: 387 EPNTLVNTQGQSCSD 431
P T S +D
Sbjct: 666 SPTAQSPTAQMSTTD 680
>SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/90 (24%), Positives = 38/90 (42%)
Frame = +3
Query: 252 QQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSD 431
QQSV +I V+ K + + + G+ QT ++ P PN + +S
Sbjct: 249 QQSVNLCGDSIMKVKEEKFDFEYCPEDHDATSLSSGSDQT-ELSPPPNDIDADSAESGES 307
Query: 432 ESCGSGDESPKRKYREMLTRRPSYRKILND 521
G+ + KR+ + MLT R+ N+
Sbjct: 308 GQNGTQQKKRKRRRKRMLTGVSRQRRAANE 337
>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
Length = 586
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 183 SIVQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKG----NVILVSKPSSVIHT 350
++ Q T S P +++ QP Q+V S+ Q+ P G +V + HT
Sbjct: 495 TLAQATDTSSIPRSRLLGPAQPTHQTVASNTSSFQACITPSGYAKSSVSAQLRKDKPAHT 554
Query: 351 T-QGTLQTLQIKPEP 392
T + T + +++P P
Sbjct: 555 TRRSTREAYRLEPAP 569
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 285 QSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSDE-SCGSGDES 458
Q+ +P + ++ P+S IH Q +I P+ T +++G S DE G GD S
Sbjct: 890 QAPPLPNKTCLQMNSPASTIHRHHTLPQYGEIYPQ-GTRPSSEGFSSGDELDSGKGDSS 947
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +3
Query: 207 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKP 386
+Q+P+ +QS + Q + T S + Q PK ++ + V + G Q+LQ
Sbjct: 687 TQSPTGAIQSPQEVTQSPQVVTQSPQEVTQSPK---VVTQSSTEVTQSPLGVTQSLQAVT 743
Query: 387 EPNTLVNTQGQSCSDESCG 443
+ T V Q+ + G
Sbjct: 744 QSPTGVTRSPQAVTQSPTG 762
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,723,924
Number of Sequences: 59808
Number of extensions: 396974
Number of successful extensions: 1103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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