Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30740
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 38 0.008
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 38 0.010
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 38 0.010
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 38 0.010
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 38 0.010
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 38 0.010
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 38 0.010
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 31 0.65
AB081597-1|BAC19844.1| 39|Caenorhabditis elegans cyclic AMP-re... 30 1.5
Z68216-5|CAA92464.1| 428|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 relate... 29 2.6
AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 relate... 29 2.6
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate... 29 2.6
Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical pr... 28 6.1
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 28 6.1
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 28 6.1
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 28 6.1
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 28 6.1
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 28 6.1
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 28 6.1
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 28 6.1
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 28 6.1
AB081598-1|BAC19845.1| 56|Caenorhabditis elegans cyclic AMP-re... 28 6.1
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/44 (50%), Positives = 26/44 (59%)
Frame = +3
Query: 405 NTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
+ Q QS E S DE+ +R RE L RRPSYR IL DL A+
Sbjct: 8 SAQQQSALQEGGDSEDEARRR--REQLNRRPSYRMILKDLETAD 49
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 678 EDQTRKRELRLMKNREAARECR 743
++ RKR++RL+KNREAA+ECR
Sbjct: 250 DESNRKRQVRLLKNREAAKECR 271
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 678 EDQTRKRELRLMKNREAARECR 743
++ RKR++RL+KNREAA+ECR
Sbjct: 242 DESNRKRQVRLLKNREAAKECR 263
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 441 GSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
G E R+ RE L RRPSYR IL DL A+
Sbjct: 10 GGDSEDEARRRREQLNRRPSYRMILKDLETAD 41
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 678 EDQTRKRELRLMKNREAARECR 743
++ RKR++RL+KNREAA+ECR
Sbjct: 267 DESNRKRQVRLLKNREAAKECR 288
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 441 GSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
G E R+ RE L RRPSYR IL DL A+
Sbjct: 35 GGDSEDEARRRREQLNRRPSYRMILKDLETAD 66
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 678 EDQTRKRELRLMKNREAARECR 743
++ RKR++RL+KNREAA+ECR
Sbjct: 263 DESNRKRQVRLLKNREAAKECR 284
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 441 GSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
G E R+ RE L RRPSYR IL DL A+
Sbjct: 29 GGDSEDEARRRREQLNRRPSYRMILKDLETAD 60
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 678 EDQTRKRELRLMKNREAARECR 743
++ RKR++RL+KNREAA+ECR
Sbjct: 261 DESNRKRQVRLLKNREAAKECR 282
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 441 GSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
G E R+ RE L RRPSYR IL DL A+
Sbjct: 29 GGDSEDEARRRREQLNRRPSYRMILKDLETAD 60
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 678 EDQTRKRELRLMKNREAARECR 743
++ RKR++RL+KNREAA+ECR
Sbjct: 261 DESNRKRQVRLLKNREAAKECR 282
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 441 GSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
G E R+ RE L RRPSYR IL DL A+
Sbjct: 29 GGDSEDEARRRREQLNRRPSYRMILKDLETAD 60
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 678 EDQTRKRELRLMKNREAARECR 743
++ RKR++RL+KNREAA+ECR
Sbjct: 242 DESNRKRQVRLLKNREAAKECR 263
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 441 GSGDESPKRKYREMLTRRPSYRKILNDLGGAE 536
G E R+ RE L RRPSYR IL DL A+
Sbjct: 10 GGDSEDEARRRREQLNRRPSYRMILKDLETAD 41
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 663 PGPILEDQTRKRELRLMKNREAAREC 740
P P++E++ +K+E KNREA+R C
Sbjct: 145 PKPLIEEKAKKQENDEKKNREASRNC 170
>AB081597-1|BAC19844.1| 39|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 alpha protein.
Length = 39
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 405 NTQGQSCSDESCGSGDESPKRKYREMLTRRPSYR 506
+ Q QS E S DE+ +R RE L RRPSYR
Sbjct: 8 SAQQQSALQEGGDSEDEARRR--REQLNRRPSYR 39
>Z68216-5|CAA92464.1| 428|Caenorhabditis elegans Hypothetical
protein F27C8.6 protein.
Length = 428
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 318 LVSKPSSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYR 476
+ +KPS+++ T+G L TL LVNT GQ D +E+P + YR
Sbjct: 65 MFTKPSNMVQWTRGALNTL--SKTLGLLVNTHGQ--VDIKWHKWNETPVKVYR 113
>AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform d protein.
Length = 870
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 207 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 353
+Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768
>AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform b protein.
Length = 870
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 207 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 353
+Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768
>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
protein 1, isoform a protein.
Length = 1022
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 207 SQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 353
+Q AQ+Q IQ QQ QT + V P+ +KP+ V +TT
Sbjct: 722 AQKIQAQIQQQIQQQQQRQAQTTPQV--VATPRKKTTPATKPAIVFYTT 768
>Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical
protein F13G3.3 protein.
Length = 501
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 219 SAQVQSVIQPNQQSVIQTASNIQ-SVQIPKGNVILV-SKPSSV-IHTTQGTLQTLQIKPE 389
+ ++++ + N S+ NI+ Q G +I + SK ++ IH Q L+ L +KPE
Sbjct: 294 NTRIKAYKRANVFSIEHVLRNIKHEQQTETGKMIAIPSKINNTWIHWPQKNLKKLAVKPE 353
Query: 390 PNTLVNTQGQSCSDESCGSGDESPK 464
N++ + + D +E PK
Sbjct: 354 FNSITHLKHIELLDGLKSKNEEEPK 378
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 300 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 443
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 254 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 305
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 300 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 443
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 258 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 309
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 300 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 443
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 253 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 304
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 300 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 443
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 160 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 211
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 300 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 443
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 211 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 262
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 300 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 443
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 293 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 344
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 300 PKGNVILVSKPSSVIHTTQGTLQTLQ----IKPEPNTLVNTQGQSCSDESCG 443
P V VS+PS+ + G Q + I P+TL TQ +C + +CG
Sbjct: 367 PSAKVSTVSEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACG 418
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 249 NQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEP 392
+Q S+I T I+S I ++ SKP + Q T++ PEP
Sbjct: 692 HQNSMIPTNPCIESAMIEYSRIMGYSKPGLATNRVQSTVEEAVDPPEP 739
>AB081598-1|BAC19845.1| 56|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 1 protein.
Length = 56
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 441 GSGDESPKRKYREMLTRRPSYR 506
G E R+ RE L RRPSYR
Sbjct: 35 GGDSEDEARRRREQLNRRPSYR 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,123,920
Number of Sequences: 27780
Number of extensions: 291410
Number of successful extensions: 840
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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