Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30740
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical...    32   0.46 
At3g51640.1 68416.m05663 expressed protein                             29   3.3  
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    29   4.3  
At3g27540.1 68416.m03442 glycosyl transferase family 17 protein ...    28   7.5  
At4g34000.2 68417.m04825 ABA-responsive element-binding protein ...    27   9.9  
At4g34000.1 68417.m04824 ABA-responsive element-binding protein ...    27   9.9  

>At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 313

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
 Frame = +3

Query: 414 GQSCSDES--CGSGDESPKRKYREMLTRRPSYRKILNDLGGAEIAVIPAGTIQTDSGLHT 587
           G S SDES   GS DE+ +   ++   R+PS+ ++L D           G IQ    +  
Sbjct: 138 GASHSDESVTAGSSDENDENANQQGSIRKPSFGQMLADASSQS----TTGEIQGSVPMKP 193

Query: 588 LAVSXXXXXXXIVQYAANQDGQFYVPGPILEDQTRKRELRLMKNREAARECR 743
           +A          +   ++Q G      P+ +++  KR+ R   NRE+AR  R
Sbjct: 194 VAPGTNLNIG--MDLWSSQAGV-----PVKDERELKRQKRKQSNRESARRSR 238


>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 174 VVTSIVQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTT 353
           V +++  ++ PS  P   VQS   P+Q S I+T  N  S  +P    I V    S   + 
Sbjct: 503 VSSNVNTISRPSTNPQPNVQSSQVPSQVSSIRTFDNPISFGLPSPFTIPVYSSGSTTSSL 562

Query: 354 QGTLQTLQIKPEP 392
             +  T  + P+P
Sbjct: 563 GFSPPTELVFPQP 575


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 201 LPSQAPSAQVQSVIQPNQQSVIQTASNIQSV-QIPKGNVILVSKPSSVIH 347
           LPS  PSA  QS + P  + V  +  N  SV Q P  N +  S P   +H
Sbjct: 351 LPSTTPSAS-QSAMAPGSRGVSASTVNASSVEQTPNRNHLWPSGPLGRLH 399


>At3g27540.1 68416.m03442 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 390

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 105 WCRSLQPSLPCQLRSHYLRFQIYATVTGRKFSLHK 1
           WC  + P L  QL+++   F+ Y      + S+H+
Sbjct: 230 WCDDIPPVLHLQLKNYLYSFEYYVDSKSWRASIHR 264


>At4g34000.2 68417.m04825 ABA-responsive element-binding protein /
           abscisic acid responsive elements-binding factor (ABRE)
           / ABA-responsive elements-binding factor (ABF3)
           identical to abscisic acid responsive elements-binding
           factor (ABF3) GI:6739280 from [Arabidopsis thaliana];
           identical to cDNA abscisic acid responsive
           elements-binding factor (ABRE) mRNA, complete cds
           GI:6739279
          Length = 454

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 648 GQFYVPGPILEDQTRKRELRLMKNREAARECR 743
           G+    G +LE    +R+ R++KNRE+A   R
Sbjct: 359 GRVRKTGAVLEKVIERRQKRMIKNRESAARSR 390


>At4g34000.1 68417.m04824 ABA-responsive element-binding protein /
           abscisic acid responsive elements-binding factor (ABRE)
           / ABA-responsive elements-binding factor (ABF3)
           identical to abscisic acid responsive elements-binding
           factor (ABF3) GI:6739280 from [Arabidopsis thaliana];
           identical to cDNA abscisic acid responsive
           elements-binding factor (ABRE) mRNA, complete cds
           GI:6739279
          Length = 449

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 648 GQFYVPGPILEDQTRKRELRLMKNREAARECR 743
           G+    G +LE    +R+ R++KNRE+A   R
Sbjct: 359 GRVRKTGAVLEKVIERRQKRMIKNRESAARSR 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,615
Number of Sequences: 28952
Number of extensions: 263524
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)