Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30739
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    29   0.97 
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    27   3.9  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.9  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   3.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   6.8  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   9.0  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    25   9.0  

>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +1

Query: 142 IVDVRVIRDDEKLYVNCGDSKSCDTIESSLAKLSLNRCSEVSDWITLN--VGGRYFTTSR 315
           ++D+  +  D ++ ++ GD K  ++I S+L++L  +     S+W+ ++     RY   +R
Sbjct: 160 LIDIANVNSDRQIVLS-GDKKELESITSTLSELVRSLGKLRSNWLDVSGAFHSRYMLPAR 218

Query: 316 STLQS 330
            +L++
Sbjct: 219 DSLKN 223


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 415 GAYLIDRSPEYFEPILNYLRHGEVIIDKYV 504
           G  LI R  E  +P+L+Y++  E I  +YV
Sbjct: 105 GKILIQRDEETHKPVLHYIKLPEDISKRYV 134


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +1

Query: 370 DNNMY-LMN--PSATDSRGAYLIDRSPEYFEPILNYLRHGEVIIDKYVNPRGVLEE 528
           +NN+Y ++N  P  ++++   +I +SP+  E I  YL+  + I+  +V P   LEE
Sbjct: 516 NNNVYKILNIFPFKSETKRMGIIVQSPD--EKITFYLKGADSIMQNFVKPSFWLEE 569


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 251 GVPKYRIG*H*MWGDVILLLLAQHYSLKSHFRCWLE 358
           GVPK   G H + GD+ +LLL    + KS F  ++E
Sbjct: 513 GVPKNINGKHKIRGDINVLLLGDPGTAKSQFLKYVE 548


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +1

Query: 292 GRYFTTSRSTLQSKEPLSMLARMFADDNNMYLMNPSATDSRGAYLIDRSPEYFEPILN 465
           G  F T   T  S     +    F D    Y++ P  +D+   YLI   P+Y    LN
Sbjct: 445 GMVFYTHGWTKSSLSTGLLHHHRFGDTVTWYVLPPDESDAFERYLISSYPQYTMEDLN 502


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 116 DYSLKMVVRLLTFEL*ETTRSCMSTAAIAKAVILLKVPWQNYH*IGVPKYR 268
           D+S+ + + L+T +  E+ +S  S +AIAK  +    P +  H + VP  R
Sbjct: 53  DWSVSVQMPLVTSKTKESEKSPKSWSAIAKKHVQGDSPVKKSHSVPVPSDR 103


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 298 NVPPHLVLSNPILRNTYSMII 236
           NVPP +VL N  +RN+  +++
Sbjct: 53  NVPPLIVLRNKTIRNSIEVLV 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,287
Number of Sequences: 5004
Number of extensions: 60326
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)