Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30739
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 70 2e-12
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 52 4e-07
02_04_0590 - 24154366-24155742 50 2e-06
04_04_0410 - 25010455-25011819 40 0.002
07_03_0093 + 13330867-13332312 36 0.047
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966... 33 0.19
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 32 0.58
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 30 2.3
03_02_0013 - 4921925-4922077,4922176-4922252,4922360-4922445,492... 29 4.1
06_03_1294 - 29080347-29081447 29 5.4
09_03_0211 + 13511893-13512259,13512563-13513038 28 9.4
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 28 9.4
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 70.1 bits (164), Expect = 2e-12
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Frame = +1
Query: 256 SEVSDWITLNVGGRYFTTSRSTLQSKEPLSMLARMFADDNNMYLMNPSATDSRGAYLIDR 435
S S + LN+GG+ + T+ TL +EP SMLA MF+ + + P D+ G +DR
Sbjct: 7 SSSSSPVLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTL----PRHPDT-GMVFVDR 61
Query: 436 SPEYFEPILNYLRHGEVIIDKYVNPRGVLEEAVFYGIDSMIPHIQKIIEDSKSYDSNHA- 612
++F +LN+LR G V + +L EA +Y + + I + + + A
Sbjct: 62 DGKHFRHVLNWLRDGAVPDMSESEYQQLLREAEYYQLLGLADCINDRLGWKNDENFSEAE 121
Query: 613 LTRMDVVRALIKTSTSIELRFQGVNLAGADL 705
LTR DV++ + + +RF+GVNL+G DL
Sbjct: 122 LTRKDVIKCI----QAPRVRFRGVNLSGLDL 148
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 52.4 bits (120), Expect = 4e-07
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 24/168 (14%)
Frame = +1
Query: 274 ITLNVGGRYFTTSRSTLQSKEPLSMLARMFADDNNMYLMNPSATDSRGAYLIDRSPEYFE 453
I LN+GG + T+ TL ++P S+LA + L P+ D GA +DR E F
Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGL--PTTED--GAVFVDRDGELFR 60
Query: 454 PILNYLRHGEVIIDKYVNPRGVLEEAVFYGID---------------------SMIPHIQ 570
+LN+LR G V R +L EA +Y + +I I
Sbjct: 61 HVLNWLRDGAVPALADAEYRQLLREAEYYRLPVYEQCLLPPWLCVWGDFDPNAGLIDCIS 120
Query: 571 KIIE--DSKSYDSNHA-LTRMDVVRALIKTSTSIELRFQGVNLAGADL 705
+ IE D K S+ A LTR DV++ + + ++RF+GVNL+G DL
Sbjct: 121 ERIEDWDDKIGRSSEAELTRKDVIKCI----QADKVRFRGVNLSGLDL 164
>02_04_0590 - 24154366-24155742
Length = 458
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 274 ITLNVGGRYFTTSRSTLQSKEPLSMLARMF-ADDNNMYLMNPSATDSRGAYLIDRSPEYF 450
+ LNVGGR F T STL S +ML M A N+ + Y IDR PE F
Sbjct: 8 VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYFIDRDPECF 67
Query: 451 EPILNYLRHGEVIIDKYVNPRGVLEEAVFYGI 546
+L+ LR G + + +V + EA++YG+
Sbjct: 68 AVLLDLLRTGGLHVPPHVADGVLCREALYYGL 99
>04_04_0410 - 25010455-25011819
Length = 454
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Frame = +1
Query: 274 ITLNVGGRYFTTSRSTLQSKEPLSMLARMFADDNNMYLMNPSATDSRGA--------YLI 429
+ NVGG+ F T+ +TL + SML + N+ G Y I
Sbjct: 6 VRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAGGGGGGGGGGGGGGVAEYFI 65
Query: 430 DRSPEYFEPILNYLRHGEVIIDKYVNPRGVLEEAVFYGI 546
DR+P F +L+ LR G + + + + + EA++YG+
Sbjct: 66 DRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGL 104
>07_03_0093 + 13330867-13332312
Length = 481
Score = 35.5 bits (78), Expect = 0.047
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +1
Query: 265 SDWITLNVGGRYFTTSRSTLQSKEPLSMLARMFADDNNMYLMNPSATDSRGAYLIDRSPE 444
S +TLNVGG F T+ +TL S LA + + T + + +DR P
Sbjct: 3 SSVVTLNVGGEVFQTTVATLSRAGASSPLASL------------APTPASAPHFLDRDPR 50
Query: 445 YFEPILNYLRHGEVI---IDKYVNPRGVLEEAVFYGIDSMI 558
F +L++LR G + D +L EA +G++ +
Sbjct: 51 LFATLLSFLRRGRLAPTSPDSDPPSPALLAEARHFGVEGAL 91
>05_04_0393 -
20895485-20895645,20895750-20896358,20896541-20896616,
20896729-20896920,20897118-20897438,20897880-20898119,
20898205-20898522,20898621-20898678,20898778-20898936,
20900090-20900308,20900400-20900614
Length = 855
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 16 SHKKQNGKVLVVEDTLEAFKLEISNVFEIGGDFRLF-TENGCEIVDVRVIRDDEKLYV 186
+ + GK++ + T+E F++ I ++ L + G EI + VIRD++KL++
Sbjct: 780 NRSSEAGKLINLPGTMEEFRIIIEEKLKVDARKTLIMNDEGAEIDSIDVIRDNDKLFI 837
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 22 KKQNGKVLVVEDTLEAFKLEISNVFEIGGD---FRLFTENGCEIVDVRVIRDDEKLYVNC 192
+++ G V+ + T+E + G RL E+G ++DV ++ D +KLY+
Sbjct: 786 RRREGVVVWIPHTIEGLVSSAQEKLGLAGSGEGLRLLGEDGARVLDVDMVHDGQKLYLVV 845
Query: 193 G 195
G
Sbjct: 846 G 846
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 406 DSRGAYLIDRSPEYFEPILNYLRHGEVIIDKYVNPRGVLEEAVFYGIDSMIPHI 567
++RGAY PE F I +Y G + + NPR V E + S IPH+
Sbjct: 552 ENRGAY-----PEEFGVIASYKGQGRIAQPGFKNPRWVDGELLVLNGKSTIPHL 600
>03_02_0013 -
4921925-4922077,4922176-4922252,4922360-4922445,
4922527-4922720,4922829-4923115,4923219-4923345,
4923586-4923816,4923982-4924047,4925300-4925474,
4925563-4925770,4925886-4925934,4926249-4926578
Length = 660
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -2
Query: 431 SIKYAPLESVALGFIKYILLS---SANILASIESGSLDCNVEREVVK*RPPTFSVIQSDT 261
S++ ++A+ F K I+ S +L ++ ++ C++ + V R P+ I+ DT
Sbjct: 483 SVEIGLAVALAISFAKIIIQSIRPQVEVLGRLQGTNIFCSIRQYPVACRIPSVLTIRIDT 542
Query: 260 SEHLF-NDNFAKE 225
S F N F KE
Sbjct: 543 SFLCFINSTFIKE 555
>06_03_1294 - 29080347-29081447
Length = 366
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 304 TTSRSTLQSKEPLSMLARMFADDNNMYLMNPSATDSRGA 420
+T+ + QSK PL++L + + N +L +PS +RGA
Sbjct: 9 STTSCSKQSKLPLALLT-LECNSNKCFLFDPSTKQTRGA 46
>09_03_0211 + 13511893-13512259,13512563-13513038
Length = 280
Score = 27.9 bits (59), Expect = 9.4
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 166 DDEKLYVNCGDSKSCDTIESS--LAKLSLNRCSEVSDWITLNVGGRYFTTSRSTLQSKEP 339
DDE+ D+ +I S LA L+ ++ WIT VGG++ T ST+ +
Sbjct: 81 DDEEESNEVNDTLLLYSISSQQLLANSGLDDLKDLFYWITPQVGGKFCTAFFSTVVT--- 137
Query: 340 LSMLARMFADDNNMYLMNPSATDSRGAYLIDRSPEYF 450
L D + L+ S + R YL++ E F
Sbjct: 138 LDFSPNPTFDIVAVTLVQNSVYNFREIYLLESRGELF 174
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Frame = +2
Query: 20 IRNRM--AKFWLWKTR----LKPLNWKYQMFLK*AEI 112
IRN A W W+ + +KPL W QMFL E+
Sbjct: 384 IRNEFYNAAIWYWRKKRAELIKPLQWLAQMFLPAPEV 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,055,611
Number of Sequences: 37544
Number of extensions: 336723
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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