Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30737
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    31   0.18 
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   2.2  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.9  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.8  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   5.1  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   6.7  

>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/85 (22%), Positives = 42/85 (49%)
 Frame = +1

Query: 502 LKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETR 681
           L +  + +K  + Q+ N       H+E  + K E+K E + P+ +++     + + +   
Sbjct: 181 LAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPE-IKKQEGGSSTEKVGQP 239

Query: 682 TSQSDKSQGATTPKDDKHRSQ*QAS 756
           +S  DK++G+T+ KD     + + S
Sbjct: 240 SSSDDKAKGSTS-KDQPSEEEEKTS 263


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 535 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRT 645
           V+  PND     P    P P P++K++ R P   R T
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLT 45


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +1

Query: 586  PKPKPELKLEIRNPDPL---RRTNQPLNVKDLETRTSQSDKSQGATTPKDDKHR 738
            PK + +++  IR P      + TN+  N+K  +T +S+SDK + +   K++K R
Sbjct: 1098 PKMESQIEHAIRTPVSSFAKQTTNKHANLKQKKTHSSKSDK-KSSRRRKNEKRR 1150


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 424 SEQFELHGVCFPNRWVAGPSPNVACTSNPIDNLGIP 317
           S+Q        P+  +  PSP+++ T  P  N+G P
Sbjct: 548 SQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPP 583


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 511 KFQPAKNRVKQYPNDL--THHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRT 684
           K+QP K  +K+   +L   H     +  K K + K         +RT+  + +  L ++ 
Sbjct: 39  KYQP-KGAMKEVIYELPEVHEKKDKKPEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKV 97

Query: 685 SQSDKSQGATTPKDDKHRS 741
           +  + ++ +T  ++D+H S
Sbjct: 98  TSKNYNEFSTLEEEDEHNS 116


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 547 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSD 696
           P      N   E+P  KP +   + +P P+  TN+   + D++T +   D
Sbjct: 203 PTQGASSNVTPESPPEKP-IPSFVLSPPPVSATNEANKLSDIQTSSPSQD 251


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 13  QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALEITE 120
           +++G  ++ IQI +  YH+A   SCE   V G  E  E
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYE 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,002
Number of Sequences: 5004
Number of extensions: 56273
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)