Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30737
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                34   0.14 
SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1)           31   0.77 
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)                  30   1.8  
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     29   4.1  
SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   29   5.4  
SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)                    28   7.2  
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)                   28   7.2  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   7.2  
SB_8972| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         28   9.5  
SB_30968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)           28   9.5  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   9.5  

>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 187 DGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTH---HNYDSG 306
           D   CG+  C+ DE+    T+RC P + VC+ T+    NYD G
Sbjct: 118 DESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEG 160


>SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1)
          Length = 202

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 175 QITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 327
           ++ L  I CG   C  ++ C PET  C    + C   + N+     +  CQ
Sbjct: 114 ELRLSRILCG---CSCEDECYPETCECILNGIGCQVDYGNFPCSCSISNCQ 161


>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
          Length = 507

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 560 VKSLGYCFTRFLAGWN 513
           V+  GYCFTR L GWN
Sbjct: 482 VEDTGYCFTRSLHGWN 497


>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +1

Query: 160 GVASAQITLDGIRCGQLICQLDEY-CSPETNRCAPCNVVCN---KTHHNYDSGLC 312
           GV   +  LD +RCG  +C L+   C  +  + +     C    K   ++DSGLC
Sbjct: 251 GVKDCEHGLDELRCGSSVCPLNSLNCKDKHKQKSQSGEKCRFSFKGRCDFDSGLC 305


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 559 THHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTP 720
           T+H+P       K +LK+     D  + TN+ +  K+    TS    S G +TP
Sbjct: 816 TNHHPAVHGESDKADLKINTETTDDNKMTNR-VKTKEESLGTSPRRSSIGGSTP 868


>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 547 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTP 720
           P D    +P    PK K  L  EI+         +P + K    RTS ++  +  TTP
Sbjct: 454 PQDWNKEHPDLSTPK-KTALVAEIKKEAEEEEEKEPKSEKKKRKRTSDNESEKEETTP 510


>SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 523 AKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV-KDLETRTSQSDK 699
           A  R+ Q P   +   P    P+P+PE  L++  P P   T +P    K    R +++D+
Sbjct: 35  AMGRLAQLPG-ASRAAPPPPVPEPEPEPDLDLDLPVPPHETPRPKKTGKRQPMRKAKADR 93

Query: 700 SQGATTP 720
             G + P
Sbjct: 94  PLGPSPP 100


>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 595  KPELKLEIRNPDPLRRTNQ--PLNVKDLETRTSQSDKSQGATTPKDDKH 735
            KP   +  RN  P+R T+   P NVK + TR ++ +K +  T     KH
Sbjct: 868  KPNGSVRDRNTSPIRFTSTTIPENVKLIRTRIAEREKLEFDTETNTAKH 916


>SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 157

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 523 AKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV-KDLETRTSQSDK 699
           A  R+ Q P   +   P    P+P+PE  L++  P P   T +P    K    R +++D+
Sbjct: 75  AMGRLAQLPG-ASRAAPPPPVPEPEPEPDLDLDLPVPPLETPRPKKTGKRQPMRKAKADR 133

Query: 700 SQGATTP 720
             G + P
Sbjct: 134 PLGPSPP 140


>SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)
          Length = 703

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 235 SPETNRCAPCNVVCNKTHHNY 297
           S ETN  +P N++CN  H +Y
Sbjct: 640 SLETNTASPPNIICNSGHASY 660


>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
          Length = 573

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 211 ICQLDEYCSPETNRCAP 261
           +C+  EYC P  NRC P
Sbjct: 267 VCKSTEYCHPVLNRCLP 283


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 516 PASQEPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPTSQ 659
           P S EP             S  S E ETR    +T+P SP   EP ++
Sbjct: 850 PVSPEPENQYNHYYQTRPVSPPSKEPETRYYQEDTRPASPPAKEPETR 897


>SB_8972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 505 KQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV-KDLETR 681
           K+ F+P     KQ P D   HN  +  P+     KL  R  D   + NQP+N+ K  E  
Sbjct: 18  KKSFEPDS---KQRPRD---HNYKSTVPR---STKLSYRRMDVHGKDNQPVNIKKSFEPD 68

Query: 682 TSQ--SDKSQGATTPK 723
           ++Q   D +  +T P+
Sbjct: 69  SNQRPGDHNYKSTVPR 84


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 565 HNPHAEAPKPKPELKLEIRNPDP-LRRTNQPLNVKDLETRTSQSDKSQGATTPKDDKH 735
           H+P ++   P+P+L+ ++  P+P L      L+  + + R  +SD    +  P+ D H
Sbjct: 610 HDPESDMRDPEPDLESDLHGPEPDLYDPGPDLHDPESDLRDPESD----SRDPEPDLH 663


>SB_30968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 235 SPETNRCAPCNVVCNKTHHN 294
           SP T    PC   C K HHN
Sbjct: 64  SPFTKHKRPCTAPCRKAHHN 83


>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
          Length = 198

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 196 RCGQLICQ-LDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQG 330
           RC    C     +C PET  C  C +      H Y   LC    QG
Sbjct: 14  RCVLCSCNDRSRFCHPETGVCTDCKI----GTHGYRCELCTNNVQG 55


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 196  RCGQLICQ-LDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQG 330
            RC    C     +C PET  C  C +      H Y   LC    QG
Sbjct: 1004 RCVLCSCNDRSRFCHPETGVCTDCKI----GTHGYRCELCTNNVQG 1045


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,144,410
Number of Sequences: 59808
Number of extensions: 483840
Number of successful extensions: 1569
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)