Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30736
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   2.1  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    26   4.9  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 483  RAPQALH---LAHVPTYRLCNYFMS*NRNIQVFLIMLSHTPLSCTV 611
            R P A H   L H+  YRL  +F S  R + VF++ +    + CT+
Sbjct: 888  RDPDADHPSSLYHICGYRLTKFFKSIFRPMNVFVLKVGTLAVICTI 933


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 312 PENHETAELRIHAPAFERINTNTPLILTIHKP*KRTHIEAKEIFYSFVIIP 160
           PEN     L +  P F R ++ T L+  IH      H+++K++  +  + P
Sbjct: 525 PENFRRTTLYLQHPVFNRYHSETELMRYIH------HLQSKDLSLAHAMTP 569


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 607 RS*QTSLRDTSP*RSQGLPNSRIPR 681
           RS  + +R+  P   +GL NSRIPR
Sbjct: 169 RSTTSFIRNVKPRTGEGLKNSRIPR 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,724
Number of Sequences: 5004
Number of extensions: 58594
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)