Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30736
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566...    28   9.0  

>09_03_0044 -
           11855569-11855664,11855775-11855891,11856572-11856682,
           11856768-11856874,11857182-11857221,11857328-11857408,
           11857578-11857631,11857800-11857860,11857984-11858029,
           11858276-11858352,11858448-11858563,11858654-11858890
          Length = 380

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 717 SWLSCRAAADEDAWYA*VREALTSLWRCVSQACL 616
           SW+SC A    ++W A    +  S+W  +S  C+
Sbjct: 259 SWVSCVAIDASESWLACGTSSGISVWSLLSNECI 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,394,944
Number of Sequences: 37544
Number of extensions: 365604
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)