Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30736
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    34   0.14 
SB_51947| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)              31   0.75 
SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                29   4.0  
SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +3

Query: 465 RCLPPLRAPQALHLAHVPTYRLCNYFMS*NRNIQVFLIMLSHTPLSCTVITNKP---ARH 635
           R + P+R   ALHL H P       + +  R I +    + H PL+ +  T+ P   ARH
Sbjct: 421 RHIYPIRH-HALHLPHTPPRAASTQYAT-ARCIYLIRHRVPHLPLTPSRATSSPYATARH 478

Query: 636 ISIAKSRPP*LTHT 677
           I   + R P LTHT
Sbjct: 479 IYPIRHRVPHLTHT 492


>SB_51947| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)
          Length = 609

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -1

Query: 536 IA*AICWYMRKVQGLWRSQRGQTSPPILAEAHRFAPNFIFPSVQVIL---MHSPVKTLYH 366
           +A A+CW+ R V  LW    G+ S P   E    A  F+  SV  IL   +H      + 
Sbjct: 526 LAFAVCWFPRGVANLWALFAGRESVPRGLEYASTAFVFMNSSVNPILYGALHQDFNRAFR 585

Query: 365 FIANLYCK*R 336
            I  LYC+ R
Sbjct: 586 DI--LYCRTR 593


>SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 463

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 537 NCISDMLVHAQGAG-LVALSEGADIAAHPSGGSPLRPELYLSFGTSYFNAFTGEDA 373
           +C+ ++ VH++G G LV     A+    P+  S L+    ++   S  + FT ED+
Sbjct: 37  HCLEELAVHSEGRGKLVCPLCKAEFQISPADVSSLKVNFMINSIISVLSLFTSEDS 92


>SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 537 NCISDMLVHAQGAG-LVALSEGADIAAHPSGGSPLRPELYLSFGTSYFNAFTGEDA 373
           +C+ ++ VH++G G LV     A+    P+  S L+    ++   S    FT ED+
Sbjct: 42  HCLEELAVHSEGRGKLVCPLCKAEFQISPADVSSLKVNFMINSIISVLPLFTSEDS 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,156,489
Number of Sequences: 59808
Number of extensions: 444023
Number of successful extensions: 990
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)